publications

journals

books

chapters

reports

patents

outreach

theses

Computational Phenomics

In Silico Science

Other

.txt

.bib

2026

Hao, J., Li, W., Qi, H., Zheng, Y., Fu, H., and 2 more authors. (2026). Angiography-free diagnosis of retinal diseases via interpretable multi-modal learning. NPJ Digit Med. DOI: 10.1038/s41746-026-02641-2.

journals Bib

@article{Hao2026a,
  doi = {10.1038/s41746-026-02641-2},
  day = {24},
  month = apr,
  year = {2026},
  journal = {NPJ Digit Med},
  title = {Angiography-free diagnosis of retinal diseases via interpretable multi-modal learning},
  author = {Hao, J. and Li, W. and Qi, H. and Zheng, Y. and Fu, H. and Frangi, A. F. and Zhao, Y.},
  programmes = {cp-realworld},
}

Deng, J., Chen, K., Li, M., Zuo, Z., Frangi, A. F., and 1 more author. (2026). An effective deep learning algorithm for medical image registration. PLOS Digit. Health, 5(4):e0001339. DOI: 10.1371/journal.pdig.0001339.

journals Funding: INSILICO Funding: INSILEX Bib

@article{Deng2026a,
  doi = {10.1371/journal.pdig.0001339},
  pages = {e0001339},
  number = {4},
  volume = {5},
  year = {2026},
  journal = {PLOS Digit. Health},
  title = {An effective deep learning algorithm for medical image registration},
  author = {Deng, J. and Chen, K. and Li, M. and Zuo, Z. and Frangi, A. F. and Zhang, J.},
  programmes = {cp-realworld},
}

Wu, K., Pu, J., Frang, A. F., Lin, X., and Jiang, N. (2026). Dynamic accelerated cardiac CINE MRI reconstruction based on motion compensation. Vis. Comput., 42(247):1–19. DOI: https://doi.org/10.1007/s00371-026-04434-w.

journals Bib

@article{Wu2026b,
  doi = {https://doi.org/10.1007/s00371-026-04434-w},
  day = {28},
  month = feb,
  year = {2026},
  pages = {1--19},
  number = {247},
  volume = {42},
  journal = {Vis. Comput.},
  title = {Dynamic accelerated cardiac CINE MRI reconstruction based on motion compensation},
  author = {Wu, K. and Pu, J. and Frang, A. F. and Lin, X. and Jiang, N.},
  programmes = {cp-realworld},
}

Sarian, A., Girach, Z., Cooper-Knock, J., Frangi, A. F., Sergouniotis, P. I., and 1 more author. (2026). Ophthalmic Features in Stroke Patients: A Systematic Review of Imaging Studies. Curr. Eye Res., ():1–12. DOI: https://doi.org/10.1080/02713683.2026.2649415.

journals Funding: INSILEX Bib

@article{Sarian2026a,
  doi = {https://doi.org/10.1080/02713683.2026.2649415},
  day = {6},
  month = apr,
  year = {2026},
  pages = {1--12},
  number = {},
  volume = {},
  journal = {Curr. Eye Res.},
  title = {Ophthalmic Features in Stroke Patients: A Systematic Review of Imaging Studies},
  author = {Sarian, A. and Girach, Z. and Cooper-Knock, J. and Frangi, A. F. and Sergouniotis, P. I. and Julian, T. H.},
  programmes = {cp-realworld},
}

Zhang, Y., Huang, Y., Dou, H., Zhu, X., Ling, C., and 26 more authors. (2026). Artificial Intelligence in Fetal Orofacial Cleft Diagnosis: A Dual-Purpose Tool for Detection and Medical Education. Nat. Commun..

accepted.

journals Bib

@article{Zhang2026a,
  note = {accepted},
  year = {2026},
  journal = {Nat. Commun.},
  title = {Artificial Intelligence in Fetal Orofacial Cleft Diagnosis: A Dual-Purpose Tool for Detection and Medical Education},
  author = {Zhang, Y. and Huang, Y. and Dou, H. and Zhu, X. and Ling, C. and Yang, Z. and Liang, L. and Li, J. and Liang, S. and Li, R. and Cao, Y. and Zhang, Y. and Lai, J. and Zhou, Y. and Zheng, H. and Gao, X. and Yu, C. and Shi, L. and Yuan, M. and Li, H. and Huang, X. and Chen, C. and Zhang, J. and Pan, W. and Frangi, A. F. and He, G. and Yang, X. and Xiong, Y. and Yin, L. and Deng, X. and Ni, D.},
  programmes = {cp-realworld},
}

Nabavi, S., Hamedani, K. A., Moghaddam, M. E., Abin, A. A., and Frangi, A. F. (2026). Multiple teachers-meticulous student: A domain adaptive meta-knowledge distillation model for medical image classification. Med. Phys., 53(2):e70350. DOI: 10.1002/mp.70350.

journals Bib

@article{Nabavi2026a,
  doi = {10.1002/mp.70350},
  pages = {e70350},
  number = {2},
  volume = {53},
  month = feb,
  year = {2026},
  journal = {Med. Phys.},
  title = {{Multiple teachers-meticulous student: A domain adaptive meta-knowledge distillation model for medical image classification}},
  author = {Nabavi, S. and Hamedani, K. A. and Moghaddam, M. E. and Abin, A. A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Konsens, A., Frangi, A. F., and Marom, G. (2026). Automated hemodynamic modeling to explore arterial curvature effects on intracranial aneurysm initiation. Comput Methods Programs Biomed, 277:109245. DOI: 10.1016/j.cmpb.2026.109245.

journals Funding: NIHR BRC Bib

@article{Konsens2026a,
  doi = {10.1016/j.cmpb.2026.109245},
  pages = {109245},
  volume = {277},
  day = {9},
  month = jan,
  year = {2026},
  journal = {Comput Methods Programs Biomed},
  title = {Automated hemodynamic modeling to explore arterial curvature effects on intracranial aneurysm initiation},
  author = {Konsens, A. and Frangi, A. F. and Marom, G.},
  programmes = {is-modelling},
}

Wu, K., Chen, X., Cheng, N., Ravikumar, N., and Frangi, A. F. (2026). Multi-attention-aware motion estimation for cardiac MR imaging based on a feature pyramid network. Biomed Signal Process Control, 118:109714. DOI: 10.1016/j.bspc.2026.109714.

journals Funding: INSILEX Funding: Cardio-X Funding: MedIAN Bib

@article{Wu2026a,
  doi = {10.1016/j.bspc.2026.109714},
  pages = {109714},
  volume = {118},
  year = {2026},
  journal = {Biomed Signal Process Control},
  title = {Multi-attention-aware motion estimation for cardiac MR imaging based on a feature pyramid network},
  author = {Wu, K. and Chen, X. and Cheng, N. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-realworld},
}

O’Connor, D. J., Cave, A. C., Frangi, A. F., Hardy, J., Kennard, J., and 7 more authors. (2026). Unlocking the potential of disease prevention through regulatory science. Nat. Rev. Drug Discov.. DOI: 10.1038/d41573-026-00016-6.

journals Bib

@article{OConnor2026a,
  doi = {10.1038/d41573-026-00016-6},
  day = {10},
  month = feb,
  year = {2026},
  journal = {Nat. Rev. Drug Discov.},
  title = {Unlocking the potential of disease prevention through regulatory science},
  author = {O'Connor, D. J. and Cave, A. C. and Frangi, A. F. and Hardy, J. and Kennard, J. and Goodey, K. and Acha, V. and Lancaster, D. and Fisher, P. and Schmidt, N. and Porkess, S. and Fabre, A.},
  programmes = {is-trials, is-ecosystems},
}

Craven, B. A., Basciano, C. A., Afshari, P., Aycock, K. I., Ballyns, J. J., and 19 more authors. (2026). Computational Modeling and Simulation for Medical Devices: A Summary of the 2024 FDA/MDIC Symposium. Prog. Biomed. Eng., 8:013001. DOI: 10.1088/2516-1091/ae1c05.

journals Bib

@article{Craven2026a,
  doi = {10.1088/2516-1091/ae1c05},
  pages = {013001},
  volume = {8},
  year = {2026},
  journal = {Prog. Biomed. Eng.},
  title = {Computational Modeling and Simulation for Medical Devices: A Summary
  of the 2024 FDA/MDIC Symposium},
  author = {Craven, B. A. and Basciano, C. A. and Afshari, P. and Aycock, K. I. and Ballyns, J. J. and Baumann, A. P. and Bischoff, J. E. and Bodner, J. and Briant, P. and Driscoll, M. and Frangi, A. and Grant, C. G. J. and Guler, I. and Hoganson, D. M. and Imhauser, C. W. and Knudsen, L. and Liu, X. and Lurie, B. and Pai, V. M. and Palmer, M. and Pathmanathan, P. and Quevedo González, F. J. J. and Shrivastava, D. and Voisin, E.},
  programmes = {is-modelling, is-trials},
}

2025

Mao, Y., Liu, Y., Zhai, M., Jin, P., Li, W., and 15 more authors. (2025). Precision TAVR quantification- AI-accelerated TAVR planning reduces assessment time by 80% in bicuspid aortic stenosis. Eur. Heart J. Imaging Methods Pract., 3(4):qyaf153. DOI: 10.1093/ehjimp/qyaf153.

journals Funding: UK CEiRSI Funding: BHF CORE Funding: NIHR BRC Funding: INSILICO Funding: INSILEX Bib

@article{Mao2025a,
  doi = {10.1093/ehjimp/qyaf153},
  pages = {qyaf153},
  number = {4},
  volume = {3},
  month = dec,
  year = {2025},
  journal = {Eur. Heart J. Imaging Methods Pract.},
  title = {Precision {TAVR} quantification- {AI}-accelerated {TAVR} planning reduces assessment time by 80\% in bicuspid aortic stenosis},
  author = {Mao, Y. and Liu, Y. and Zhai, M. and Jin, P. and Li, W. and Dong, X. and Chen, F. and Wang, X. and Wang, Y. and Zhang, G. and Li, H. and Yang, Y. and Zhang, H. and Liu, J. and Guo, Y. and Wu, Y. and Xue, Y. and Zhang, J. and Frangi, A. F. and Yang, J.},
  programmes = {cp-realworld, is-trials},
}

Zhang, T., Cheng, X., Cheng, J., Zheng, S., Zhao, H., and 4 more authors. (2025). Plasticine: A traceable diffusion model for medical image translation. IEEE Trans Artif Intell, 6:1–14. DOI: 10.1109/TAI.2025.3647595.

journals Bib

@article{ZhangT2026a,
  doi = {10.1109/TAI.2025.3647595},
  pages = {1--14},
  volume = {6},
  month = dec,
  year = {2025},
  journal = {IEEE Trans Artif Intell},
  title = {Plasticine: A traceable diffusion model for medical image translation},
  author = {Zhang, T. and Cheng, X. and Cheng, J. and Zheng, S. and Zhao, H. and Fu, H. and Frangi, A. F. and Liu, J. and Duan, J.},
  programmes = {cp-realworld, cp-twinning},
}

Maldonado-Garcia, C., Bonazzola, R., Ferrante, E., Julian, T., Sergouniotis, P., and 2 more authors. (2025). Predicting cardiovascular disease risk using retinal optical coherence tomography imaging. Front. Artif. Intell., 8. DOI: 10.3389/frai.2025.1624550.

journals Funding: INSILICO Funding: INSILEX Bib

@article{Maldonado-Garcia2025a,
  doi = {10.3389/frai.2025.1624550},
  volume = {8},
  year = {2025},
  journal = {Front. Artif. Intell.},
  title = {Predicting cardiovascular disease risk using retinal optical coherence tomography imaging},
  author = {Maldonado-Garcia, C. and Bonazzola, R. and Ferrante, E. and Julian, T. and Sergouniotis, P. and Ravikumar, N. and Frangi, A.},
  programmes = {cp-realworld},
}

Faivre-Finn, C., Baker, C., Dempsey, C., Fisher, J., Frangi, A., and 11 more authors. (2025). The concept of virtual clinical trials: A game changer in radiation oncology research?. Radiother. Oncol., 214:111264. DOI: 10.1016/j.radonc.2025.111264.

journals Funding: NIHR BRC Bib

@article{FaivreFinn2025a,
  doi = {10.1016/j.radonc.2025.111264},
  pages = {111264},
  volume = {214},
  year = {2025},
  journal = {Radiother. Oncol.},
  title = {The concept of virtual clinical trials: A game changer in radiation oncology research?},
  author = {Faivre-Finn, C. and Baker, C. and Dempsey, C. and Fisher, J. and Frangi, A. and Gosling, A. and Hiley, C. and Lowe, M. and Marchant, T. and McWilliam, A. and Price, G. and Rieu, R. and van Herk, M. and Vasquez Osorio, E. and Woolf, D. and Aznar, M.},
  programmes = {cp-twinning, is-trials},
}

Jin, Y., Pepe, A., Li, J., Gsaxner, C., Chen, Y., and 6 more authors. (2025). Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo. ACM Comput. Surv., 57(238):1–35. DOI: 10.1145/3728632.

journals Funding: BHF CORE Funding: MRRC Funding: NIHR BRC Funding: INSILICO Bib

@article{Jin2025a,
  doi = {10.1145/3728632},
  month = jun,
  pages = {1--35},
  number = {238},
  issue = {9},
  volume = {57},
  year = {2025},
  journal = {ACM Comput. Surv.},
  title = {Aortic Vessel Tree Segmentation for Cardiovascular Diseases Treatment: Status Quo},
  author = {Jin, Y. and Pepe, A. and Li, J. and Gsaxner, C. and Chen, Y. and Puladi, B. and Zhao, F. and Pomykala, K. and Kleesiek, J. and Frangi, A. F. and Egger, J.},
  programmes = {cp-realworld},
}

Song, X., Yang, P., Zhou, F., Frangi, A. F., Xiao, X., and 3 more authors. (2025). Knowledge-aware Multisite Adaptive Graph Transformer for Brain Disorder Diagnosis. IEEE Trans Med Imaging., 44(6):2370–2383. DOI: 10.1109/tmi.2024.3453419.

journals Funding: INSILEX Bib

@article{Song2025a,
  doi = {10.1109/tmi.2024.3453419},
  month = jun,
  pages = {2370--2383},
  number = {6},
  volume = {44},
  year = {2025},
  journal = {IEEE Trans Med Imaging.},
  title = {Knowledge-aware Multisite Adaptive Graph Transformer for Brain Disorder Diagnosis},
  author = {Song, X. and Yang, P. and Zhou, F. and Frangi, A. F. and Xiao, X. and Wang, T. and Wang, S. and Lei, B.},
  programmes = {cp-realworld},
}

Liu, Z., Wang, X., Wu, Z., Ju, X., Zhu, Y.-C., and 1 more author. (2025). MRI Joint Super-Resolution and Denoising based on Conditional Stochastic Normalizing Flow. IEEE Trans Artif Intell., 6(6):1472–1487. DOI: 10.1109/tai.2024.3515936.

journals Bib

@article{LiuZ2025a,
  doi = {10.1109/tai.2024.3515936},
  pages = {1472--1487},
  number = {6},
  volume = {6},
  month = jun,
  year = {2025},
  journal = {IEEE Trans Artif Intell.},
  title = {MRI Joint Super-Resolution and Denoising based on Conditional Stochastic Normalizing Flow},
  author = {Liu, Z. and Wang, X. and Wu, Z. and Ju, X. and Zhu, Y.-C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Kalaie, S., Bulpitt, A., Frangi, A. F., and Gooya, A. (2025). An End-to-End Deep Learning Generative Framework for Refinable Shape Matching and Generation. IEEE Trans. Med. Imaging, 44(8):3323–3344. DOI: 10.1109/TMI.2025.3562756.

journals Funding: UK CEiRSI Funding: BHF CORE Funding: MRRC Funding: NIHR BRC Funding: INSILICO Funding: INSILEX Bib

@article{Kalaie2025a,
  doi = {10.1109/TMI.2025.3562756},
  month = aug,
  year = {2025},
  pages = {3323--3344},
  number = {8},
  volume = {44},
  journal = {IEEE Trans. Med. Imaging},
  title = {An End-to-End Deep Learning Generative Framework for Refinable Shape Matching and Generation},
  author = {Kalaie, S. and Bulpitt, A. and Frangi, A. F. and Gooya, A.},
  programmes = {cp-twinning},
}

MacRaild, M., Sarrami-Foroushani, A., Song, S., Liu, Q., Kelly, C., and 5 more authors. (2025). Off-label in-silico flow diverter performance assessment in posterior communicating artery aneurysms. J Neurointerv Surg., 17(11):1160–1167. DOI: 10.1136/jnis-2024-022000.

journals Funding: INSILICO Funding: INSILEX Funding: InSilc Funding: @neurIST Bib

@article{MacRaild2025b,
  doi = {10.1136/jnis-2024-022000},
  month = oct,
  pages = {1160--1167},
  number = {11},
  volume = {17},
  year = {2025},
  journal = {J Neurointerv Surg.},
  author = {MacRaild, M. and Sarrami-Foroushani, A. and Song, S. and Liu, Q. and Kelly, C. and Ravikumar, N. and Patankar, T. and Lassila, T. and Taylor, Z. A. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Bi, N., Zakeri, A., Xia, Y., Frangi, A. F., and Gooya, A. (2025). SegMorph: Concurrent Motion Estimation and Segmentation for Cardiac MRI Sequences. IEEE Trans Med Imaging., 44(9):3515–3528. DOI: 10.1109/tmi.2024.3435000.

journals Funding: UK CEiRSI Funding: BHF CORE Funding: MRRC Funding: NIHR BRC Funding: INSILICO Funding: INSILEX Bib

@article{Bi2025a,
  doi = {10.1109/tmi.2024.3435000},
  month = sep,
  pages = {3515--3528},
  number = {9},
  volume = {44},
  year = {2025},
  journal = {IEEE Trans Med Imaging.},
  title = {SegMorph: Concurrent Motion Estimation and Segmentation for Cardiac MRI Sequences},
  author = {Bi, N. and Zakeri, A. and Xia, Y. and Frangi, A. F. and Gooya, A.},
  programmes = {cp-realworld},
}

Lekadir, K., Frangi, A. F., Porras, A. R., Glocker, B., Cintas, C., and 44 more authors. (2025). FUTURE-AI: international consensus guideline for trustworthy and deployable artificial intelligence in healthcare. BMJ, 388:e081554. DOI: 10.1136/bmj.r340.

journals Bib

@article{Lekadir2025a,
  doi = {10.1136/bmj.r340},
  month = feb,
  year = {2025},
  pages = {e081554},
  volume = {388},
  journal = {BMJ},
  title = {{FUTURE-AI}: international consensus guideline for trustworthy and deployable artificial intelligence in healthcare},
  author = {Lekadir, K. and Frangi, A. F. and Porras, A. R. and Glocker, B. and Cintas, C. and Langlotz, C. P. and Weicken, E. and Asselbergs, F. W. and Prior, F. and Collins, G. S. and Kaissis, G. and Tsakou, G. and Buvat, I. and Kalpathy-Cramer, J. and Mongan, J. and Schnabel, J. A. and Kushibar, K. and Riklund, K. and Marias, K. and Amugongo, L. M. and Fromont, L. A. and Maier-Hein, L. and Cerdá-Alberich, L. and Martí-Bonmatí, L. and Cardoso, M. J. and Bobowicz, M. and Shabani, M. and Tsiknakis, M. and Zuluaga, M. A. and Fritzsche, M. C. and Camacho, M. and Linguraru, M. G. and Wenzel, M. and De Bruijne, M. and Tolsgaard, M. G. and Goisauf, M. and Cano Abadía, M. and Papanikolaou, N. and Lazrak, N. and Pujol, O. and Osuala, R. and Napel, S. and Colantonio, S. and Joshi, S. and Klein, S. and Aussó, S. and Rogers, W. A. and Salahuddin, Z. and Starmans, M. P. A.},
  programmes = {is-trials, is-ecosystems},
}

Huang, Y., Chang, A., Dou, H., Tao, X., Zhou, X., and 6 more authors. (2025). Flip Learning: Weakly supervised erase to segment nodules in breast ultrasound. Med Image Anal, 102:103552. DOI: 10.1016/j.media.2025.103552.

journals Funding: INSILICO Funding: INSILEX Bib

@article{Huang2025a,
  doi = {10.1016/j.media.2025.103552},
  month = may,
  year = {2025},
  pages = {103552},
  volume = {102},
  journal = {Med Image Anal},
  title = {Flip Learning: Weakly supervised erase to segment nodules in breast ultrasound},
  author = {Huang, Y. and Chang, A. and Dou, H. and Tao, X. and Zhou, X. and Cao, Y. and Huang, R. and Frangi, A. F. and Bao, L. and Yang, X. and Ni, D.},
  programmes = {cp-realworld},
}

Liu, Q., Lassila, T., Lin, F., MacRaild, M., Patankar, T., and 7 more authors. (2025). Key influencers in an aneurysmal thrombosis model: A sensitivity analysis and validation study. APL Bioeng, 9(1):016107. DOI: 10.1063/5.0223753.

journals Funding: BHF CORE Funding: NIHR BRC Funding: INSILICO Funding: INSILEX Funding: @neurIST Bib

@article{Liu2025a,
  doi = {10.1063/5.0223753},
  month = feb,
  year = {2025},
  pages = {016107},
  number = {1},
  volume = {9},
  journal = {APL Bioeng},
  title = {Key influencers in an aneurysmal thrombosis model: A sensitivity analysis and validation study},
  author = {Liu, Q. and Lassila, T. and Lin, F. and MacRaild, M. and Patankar, T. and Islim, F. and Song, S. and Xu, H. and Chen, X. and Taylor, Z. A. and Sarrami-Foroushani, A. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Ru, X., Wang, X., Liu, Z., Du, P., Zhao, H., and 5 more authors. (2025). Pose-independent efficient gauge equivariant network for 3D mesh aneurysm segmentation. Neurocomputing., 639:130188. DOI: 10.1016/j.neucom.2025.130188.

journals Funding: INSILICO Bib

@article{Ru2025a,
  doi = {10.1016/j.neucom.2025.130188},
  pages = {130188},
  volume = {639},
  year = {2025},
  journal = {Neurocomputing.},
  title = {Pose-independent efficient gauge equivariant network for 3D mesh aneurysm segmentation},
  author = {Ru, X. and Wang, X. and Liu, Z. and Du, P. and Zhao, H. and Wu, Z. and Ju, X. and Liu, S. and Zhu, Y.-C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Gaggion, N., Matheson, B. A., Xia, Y., Bonazzola, R., Ravikumar, N., and 4 more authors. (2025). Multi-view Hybrid Graph Convolutional Network for Volume-to-mesh Reconstruction in Cardiovascular MRI. Med Image Anal, 104:103630. DOI: 10.1016/j.media.2025.103630.

journals Funding: NIHR BRC Funding: INSILICO Funding: RS HEART GNN Bib

@article{Gaggion2025a,
  doi = {10.1016/j.media.2025.103630},
  month = may,
  pages = {103630},
  volume = {104},
  year = {2025},
  journal = {Med Image Anal},
  title = {Multi-view Hybrid Graph Convolutional Network for Volume-to-mesh Reconstruction in Cardiovascular MRI},
  author = {Gaggion, N. and Matheson, B. A. and Xia, Y. and Bonazzola, R. and Ravikumar, N. and Taylor, Z. A. and Milone, D. H. and Frangi, A. F. and Ferrante, E.},
  programmes = {cp-realworld},
}

MacRaild, M., Sarrami-Foroushani, A., Patankar, T., and Frangi, A. F. (2025). In-Silico Neurosurgery: Toward Safe, Effective and Equitable Flow Diverter Treatment of Intracranial Aneurysms. World Neurosurg, 195:123589. DOI: 10.1016/j.wneu.2024.123589.

journals Bib

@article{MacRaild2025a,
  doi = {10.1016/j.wneu.2024.123589},
  month = mar,
  year = {2025},
  pages = {123589},
  volume = {195},
  journal = {World Neurosurg},
  title = {In-Silico Neurosurgery: Toward Safe, Effective and Equitable Flow Diverter Treatment of Intracranial Aneurysms},
  author = {MacRaild, M. and Sarrami-Foroushani, A. and Patankar, T. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Mekki, Y. M., Luijten, G., Hagert, E., Belkhair, S., Varghese, C., and 10 more authors. (2025). Digital twins for the era of personalized surgery. NPJ Digit Med, 8(1):283. DOI: 10.1038/s41746-025-01575-5.

journals Funding: INSILICO Funding: INSILEX Bib

@article{Mekki2025a,
  doi = {10.1038/s41746-025-01575-5},
  month = may,
  year = {2025},
  pages = {283},
  number = {1},
  volume = {8},
  journal = {NPJ Digit Med},
  author = {Mekki, Y. M. and Luijten, G. and Hagert, E. and Belkhair, S. and Varghese, C. and Qadir, J. and Solaiman, B. and Bilal, M. and Dhanda, J. and Egger, J. and Deng, J. and Khanduja, V. and Frangi, A. F. and Zughaier, S. M. and Stotland, M. A.},
  title = {Digital twins for the era of personalized surgery},
  programmes = {cp-twinning},
}

Chakraborti, T., Banerji, C. R. S., Marandon, A., Hellon, V., Mitra, R., and 11 more authors. (2025). Personalized uncertainty quantification in artificial intelligence. Nat. Mach. Intell., 7:522–530. DOI: 10.1038/s42256-025-01024-8.

journals Bib

@article{Chakraborti2025a,
  doi = {10.1038/s42256-025-01024-8},
  year = {2025},
  pages = {522--530},
  volume = {7},
  journal = {Nat. Mach. Intell.},
  title = {Personalized uncertainty quantification in artificial intelligence},
  author = {Chakraborti, T. and Banerji, C. R. S. and Marandon, A. and Hellon, V. and Mitra, R. and Lehmann, B. and Bräuninger, L. and McGough, S. and Turkay, C. and Frangi, A. F. and Bianconi, G. and Li, W. and Rackham, O. and Parashar, D. and Harbron, C. and MacArthur, B.},
  programmes = {is-trials},
}

Hsu, W.-C., Meuschke, M., Frangi, A. F., Preim, B., and Lawonn, K. (2025). A Survey of Intracranial Aneurysm Detection and Segmentation. Med Image Anal., 101:103493. DOI: 10.1016/j.media.2025.103493.

journals Bib

@article{Hsu2025a,
  doi = {10.1016/j.media.2025.103493},
  pages = {103493},
  volume = {101},
  month = apr,
  year = {2025},
  journal = {Med Image Anal.},
  title = {A Survey of Intracranial Aneurysm Detection and Segmentation},
  author = {Hsu, W.-C. and Meuschke, M. and Frangi, A. F. and Preim, B. and Lawonn, K.},
  programmes = {cp-realworld},
}

Chew, E., Burns, S., Abraham, A., Bakhoum, M., Beckman, J., and 19 more authors. (2025). Standardization and Clinical Applications of Retinal Imaging Biomarkers for Cardiovascular Disease: NHLBI Workshop/Roadmap. Nat Rev Cardiol., 22(1):47–63.

journals Bib

@article{Chew2025a,
  pages = {47--63},
  number = {1},
  volume = {22},
  month = jan,
  year = {2025},
  journal = {Nat Rev Cardiol.},
  title = {Standardization and Clinical Applications of Retinal Imaging Biomarkers for Cardiovascular Disease: NHLBI Workshop/Roadmap},
  author = {Chew, E. and Burns, S. and Abraham, A. and Bakhoum, M. and Beckman, J. and Chui, T. and Finger, R. and Frangi, A. F. and Gottesman, R. and Grant, M. and Hanssen, H. and Lee, C. and Meyer, M. and Rizzoni, D. and Rudnicka, A. and Schuman, J. and Seidelmann, S. and Tang, H. W. and Adhikari, B. and Danthi, N. and Hong, Y. and Reid, D. and Shen, G. and Oh, Y.},
  programmes = {cp-realworld, is-ecosystems},
}

Dhesi, S. S., Adusumilli, P., Ravikumar, N., Waduud, M. A., Frood, R., and 12 more authors. (2025). Development and External Validation of [18F]FDG PET-CT-Derived Radiomic Models for Prediction of Abdominal Aortic Aneurysm Growth Rate. Algorithms, 18(2):86. DOI: 10.3390/a18020086.

journals Funding: RADNET LEEDS Bib

@article{Dhesi2025a,
  doi = {10.3390/a18020086},
  pages = {86},
  number = {2},
  volume = {18},
  year = {2025},
  journal = {Algorithms},
  title = {Development and External Validation of {[18F]}FDG PET-CT-Derived Radiomic Models for Prediction of Abdominal Aortic Aneurysm Growth Rate},
  author = {Dhesi, S. S. and Adusumilli, P. and Ravikumar, N. and Waduud, M. A. and Frood, R. and Frangi, A. F. and McDermott, G. and Rudd, J. H. F. and Huang, Y. and Boyle, J. R. and Elkhawad, M. and Newby, D. E. and Joshi, N. and Kwan, J. Y. and Coughlin, P. and Bailey, M. A. and Scarsbrook, A. F.},
  programmes = {cp-realworld, is-trials},
}

Dou, H., Virtanen, S., Ravikumar, N., and Frangi, A. F. (2025). A Generative Shape Compositional Framework to Synthesize Populations of Virtual Chimeras. IEEE Trans Neural Netw Learn Syst., 36(3):4750–4764. DOI: 10.1109/tnnls.2024.3374121.

journals Funding: INSILEX Bib

@article{Dou2025a,
  doi = {10.1109/tnnls.2024.3374121},
  pages = {4750--4764},
  number = {3},
  volume = {36},
  month = mar,
  year = {2025},
  journal = {IEEE Trans Neural Netw Learn Syst.},
  title = {A Generative Shape Compositional Framework to Synthesize Populations of Virtual Chimeras},
  author = {Dou, H. and Virtanen, S. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-twinning},
}

Lashgari, M., Yang, Z., Bernabeu, M. O., Li, J.-R., and Frangi, A. F. (2025). SpinDoctor-IVIM: A virtual imaging framework for intravoxel incoherent motion MRI. Med Image Anal., 99:103369. DOI: 10.1016/j.media.2024.103369.

journals Funding: INSILICO Funding: BQ-MINDED Bib

@article{Lashgari2025a,
  doi = {10.1016/j.media.2024.103369},
  pages = {103369},
  volume = {99},
  month = jan,
  year = {2025},
  journal = {Med Image Anal.},
  title = {SpinDoctor-IVIM: A virtual imaging framework for intravoxel incoherent motion MRI},
  author = {Lashgari, M. and Yang, Z. and Bernabeu, M. O. and Li, J.-R. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Samei, E., Abadi, E., Bakic, P., Bliznakova, K., Bosmans, H., and 11 more authors. (2025). Virtual imaging trials in medicine: A brief takeaway of the lessons from the first international summit. Med Phys, 52(3):1950–1959. DOI: 10.1002/mp.17587.

journals Bib

@article{Samei2025a,
  doi = {10.1002/mp.17587},
  month = mar,
  year = {2025},
  pages = {1950--1959},
  number = {3},
  volume = {52},
  journal = {Med Phys},
  title = {Virtual imaging trials in medicine: A brief takeaway of the lessons from the first international summit},
  author = {Samei, E. and Abadi, E. and Bakic, P. and Bliznakova, K. and Bosmans, H. and Carton, A. K. and Frangi, A. F. and Glick, S. and Lo, J. Y. and Kinahan, P. and Maidment, A. and Ria, F. and Sechopoulos, I. and Segars, W. P. and Tanaka, R. and Vancoillie, L.},
  programmes = {cp-twinning, is-trials},
}

Munia, A. A., Abdara, M., Hasan, M., Jalali, M. S., Banerjee, B., and 4 more authors. (2025). Attention-Guided Hierarchical Fusion U-Net for Uncertainty-driven Medical Image Segmentation. Inf. Fusion, 1154:102719. DOI: 10.1016/j.inffus.2024.102719.

journals Bib

@article{Munia2024a,
  doi = {10.1016/j.inffus.2024.102719},
  pages = {102719},
  volume = {1154},
  month = mar,
  year = {2025},
  journal = {Inf. Fusion},
  title = {Attention-Guided Hierarchical Fusion U-Net for Uncertainty-driven Medical Image Segmentation},
  author = {Munia, A. A. and Abdara, M. and Hasan, M. and Jalali, M. S. and Banerjee, B. and Khosravi, A. and Hossain, I. and Fu, H. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Academy of Medical Sciences, (2025). FORUM roundtable: Regulating AI and computational models in clinical trials. The Academy of Medical Sciences. Available at: https://acmedsci.ac.uk/policy/policy-projects/regulating-ai-and-computational-models-in-clinical-trials.

Chairs: Ashby, D. and O’Connor, D. Contributor: Frangi, A. F. Held in partnership with the Regulatory Innovation Office (RIO).

reports Bib

@online{AMS2025_AI_Clinical_Trials,
  urldate = {2026-03-06},
  organization = {The Academy of Medical Sciences},
  note = {Chairs: Ashby, D. and O'Connor, D. Contributor: Frangi, A. F. Held in partnership with the Regulatory Innovation Office (RIO)},
  url = {https://acmedsci.ac.uk/policy/policy-projects/regulating-ai-and-computational-models-in-clinical-trials},
  day = {5},
  month = sep,
  year = {2025},
  title = {{FORUM} roundtable: Regulating {AI} and computational models in clinical trials},
  author = {{Academy of Medical Sciences}},
  location = {London, UK},
  programmes = {is-trials, is-ecosystems},
}

Reich, V., Mitchell, C., Redrup Hill, E., Myles, P., Branson, R., and 11 more authors. (2025). Synthetic data for development of AI as a medical device (AlaMDs): Regulatory considerations.

Prepared on behalf of the Expert Working Group convened by the MHRA and PHG Foundation..

reports Bib

@online{Reich2025a,
  note = {Prepared on behalf of the Expert Working Group convened by the MHRA and PHG Foundation.},
  doi = {10.61599/vhac1},
  month = jul,
  year = {2025},
  journal = {Medicines and Healthcare products Regulatory Agency \& PHG Foundation},
  title = {Synthetic data for development of AI as a medical device (AlaMDs): Regulatory considerations},
  author = {Reich, V. and Mitchell, C. and Redrup Hill, E. and Myles, P. and Branson, R. and Pearson, R. and Chu, D. and Denniston, A. and Frangi, A. F. and Habli, I. and Ioannides, M. and Ordish, J. and Palmer, M. and Quigley, G. and Tucker, A. and Yau, C.},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

Deo, Y. (2025). Deep learning with simulated data for medical imaging. PhD Thesis, University of Leeds. Supervised by Lassila, T., and Frangi, A. F.

theses
Lin, F. (2025). Vessel Tree Segmentation and Modality Agnostic Aneurysm Detection. PhD Thesis, University of Leeds. Supervised by Frangi, A. F.

theses
Wu, K. (2025). Deep learning-based and motion-compensated reconstruction for undersampled cardiac MRI. PhD Thesis, University of Leeds. Supervised by Ravikumar, N., Frangi, A. F., and Lassila, T.

theses
Dou, H. (2025). Virtual Cardiac Populations: Leveraging Generative Deep Learning for Advanced In-Silico Trials. PhD Thesis, University of Leeds. Supervised by Frangi, A. F., Ravikumar, N., and Virtanen, S.

theses
Liu, Q. (2025). Calibration and acceleration of thrombosis modelling in intracranial aneurysms. PhD Thesis, University of Leeds. Supervised by Frangi, A. F., Lassila, T., and Sarrami, A.

theses
Maldonado, C. L. (2025). Multi-Modal Deep Learning for Cardiovascular Disease Diagnosis and Risk Prediction Using Retinal Imaging. PhD Thesis, University of Leeds. Supervised by Frangi, A. F., and Ravikumar, N.

theses
Cheng, N. (2025). Deep generative model for synthesising and analysing cardiac magnetic resonance images. PhD Thesis, University of Leeds. Supervised by Ravikumar, N., and Frangi, A. F.

theses

2024

Thomson, R. J., Grafton-Clarke, C., Matthews, G., Swoboda, P. P., Swift, A. J., and 4 more authors. (2024). Risk factors for raised left ventricular filling pressure by cardiovascular magnetic resonance: Prognostic insights. ESC Heart Fail, 11(6):4148–4159. DOI: 10.1002/ehf2.15011.

journals Bib

@article{Thomson2024,
  doi = {10.1002/ehf2.15011},
  month = dec,
  year = {2024},
  pages = {4148--4159},
  number = {6},
  volume = {11},
  journal = {ESC Heart Fail},
  title = {Risk factors for raised left ventricular filling pressure by cardiovascular magnetic resonance: Prognostic insights},
  author = {Thomson, R. J. and Grafton-Clarke, C. and Matthews, G. and Swoboda, P. P. and Swift, A. J. and Frangi, A. and Petersen, S. E. and Aung, N. and Garg, P.},
  programmes = {cp-realworld},
}

Wong, M. Y. Z., Vargas, J. D., Naderi, H., Sanghvi, M. M., Raisi-Estabragh, Z., and 10 more authors. (2024). Concurrent Left Ventricular Myocardial Diffuse Fibrosis and Left Atrial Dysfunction Strongly Predict Incident Heart Failure. JACC Cardiovasc Imaging, 17(5):560–562. DOI: 10.1016/j.jcmg.2023.11.006.

journals Bib

@article{Wong2024a,
  doi = {10.1016/j.jcmg.2023.11.006},
  month = may,
  year = {2024},
  pages = {560--562},
  number = {5},
  volume = {17},
  journal = {JACC Cardiovasc Imaging},
  title = {Concurrent Left Ventricular Myocardial Diffuse Fibrosis and Left Atrial Dysfunction Strongly Predict Incident Heart Failure},
  author = {Wong, M. Y. Z. and Vargas, J. D. and Naderi, H. and Sanghvi, M. M. and Raisi-Estabragh, Z. and Suinesiaputra, A. and Bonazzola, R. and Attar, R. and Ravikumar, N. and Hann, E. and Neubauer, S. and Piechnik, S. K. and Frangi, A. F. and Petersen, S. E. and Aung, N.},
  programmes = {cp-realworld},
}

Abadi, E., Barufaldi, B., Lago, M., Badal, A., Mello-Thoms, C., and 10 more authors. (2024). Towards widespread use of virtual trials in medical imaging innovation and regulatory science. Med Phys., 51(12):9394–9404. DOI: 10.1002/mp.17442.

journals Funding: INSILICO Funding: INSILEX Bib

@article{Abadi2024a,
  doi = {10.1002/mp.17442},
  pages = {9394--9404},
  number = {12},
  volume = {51},
  month = dec,
  year = {2024},
  journal = {Med Phys.},
  title = {Towards widespread use of virtual trials in medical imaging innovation and regulatory science},
  author = {Abadi, E. and Barufaldi, B. and Lago, M. and Badal, A. and Mello-Thoms, C. and Bottenus, N. and Wangerin, K. and Goldburgh, M. and Tarbox, L. and Beaucage-Gauvreau, E. and Frangi, A. F. and Maidment, A. and Kinahan, P. and Bosmans, H. and Samei, E.},
  programmes = {cp-twinning, is-trials},
}

Aksoy, N., Sharoff, S., Baser, S., Ravikumar, N., and Frangi, A. F. (2024). Beyond images: an integrative multi-modal approach to chest x-ray report generation. Front Radiol., 4:1339612. DOI: 10.3389/fradi.2024.1339612.

journals Bib

@article{Aksoy2024a,
  doi = {10.3389/fradi.2024.1339612},
  pages = {1339612},
  volume = {4},
  month = feb,
  year = {2024},
  journal = {Front Radiol.},
  title = {Beyond images: an integrative multi-modal approach to chest x-ray report generation},
  author = {Aksoy, N. and Sharoff, S. and Baser, S. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Bonazzola, R., Ferrante, E., Ravikumar, N., Xia, Y., Keavney, B., and 3 more authors. (2024). Unsupervised ensemble-based phenotyping enhances gene discoverability in imaging genetics: new associations from left-ventricular morphology. Nature Mach. Intell., 6(3):291–306. DOI: 10.1038/s42256-024-00801-1.

journals Funding: INSILICO Funding: INSILEX Funding: TUSCA Bib

@article{Bonazzola2024a,
  doi = {10.1038/s42256-024-00801-1},
  pages = {291--306},
  number = {3},
  volume = {6},
  month = mar,
  year = {2024},
  journal = {Nature Mach. Intell.},
  title = {Unsupervised ensemble-based phenotyping enhances gene discoverability in imaging genetics: new associations from left-ventricular morphology},
  author = {Bonazzola, R. and Ferrante, E. and Ravikumar, N. and Xia, Y. and Keavney, B. and Plein, S. and Syeda-Mahmood, T. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Chen, X., Xia, Y., Dall’Armellina, E., Ravikumar, N., and Frangi, A. F. (2024). Joint shape/texture representation learning for cardiovascular disease diagnosis from MRI. Eur Heart J - Imag Meth Practice, 2(1):qyae042. DOI: 10.1093/ehjimp/qyae042.

journals Funding: INSILICO Funding: INSILEX Bib

@article{Chen2024a,
  doi = {10.1093/ehjimp/qyae042},
  pages = {qyae042},
  number = {1},
  volume = {2},
  month = jan,
  year = {2024},
  journal = {Eur Heart J - Imag Meth Practice},
  title = {Joint shape/texture representation learning for cardiovascular disease diagnosis from {MRI}},
  author = {Chen, X. and Xia, Y. and Dall’Armellina, E. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Girach, Z., Sarian, A., Maldonado-García, C., Ravikumar, N., Sergouniotis, P. I., and 3 more authors. (2024). Retinal imaging for the assessment of stroke risk: a systematic review. J Neurol., 271(5):2285–2297. DOI: 10.1007/s00415-023-12171-6.

journals Funding: NIHR BRC Funding: INSILEX Bib

@article{Girach2024a,
  doi = {10.1007/s00415-023-12171-6},
  pages = {2285--2297},
  number = {5},
  volume = {271},
  month = may,
  year = {2024},
  journal = {J Neurol.},
  title = {Retinal imaging for the assessment of stroke risk: a systematic review},
  author = {Girach, Z. and Sarian, A. and Maldonado-García, C. and Ravikumar, N. and Sergouniotis, P. I. and Rothwell, P. M. and Frangi, A. F. and Julian, T. H.},
  programmes = {cp-realworld},
}

Harkness, R., Frangi, A. F., Zucker, K., and Ravikumar, N. (2024). Multi-centre benchmarking of deep learning models for COVID-19 detection in chest x-rays. Front. Radiol., 4:1386906. DOI: 10.3389/fradi.2024.1386906.

journals Bib

@article{Harkness2024a,
  doi = {10.3389/fradi.2024.1386906},
  pages = {1386906},
  volume = {4},
  year = {2024},
  journal = {Front. Radiol.},
  title = {Multi-centre benchmarking of deep learning models for COVID-19 detection in chest x-rays},
  author = {Harkness, R. and Frangi, A. F. and Zucker, K. and Ravikumar, N.},
  programmes = {cp-realworld, is-trials},
}

Liu, X., Wu, Z., Wang, X., Liu, Q., Pozo, J. M., and 1 more author. (2024). Joint magnetic resonance imaging artifacts and noise reduction on discrete shape space of images. Pattern Recognit., 153:110495. DOI: 10.1016/j.patcog.2024.110495.

journals Bib

@article{Liu2024a,
  doi = {10.1016/j.patcog.2024.110495},
  pages = {110495},
  volume = {153},
  month = sep,
  year = {2024},
  journal = {Pattern Recognit.},
  title = {Joint magnetic resonance imaging artifacts and noise reduction on discrete shape space of images},
  author = {Liu, X. and Wu, Z. and Wang, X. and Liu, Q. and Pozo, J. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

MacRaild, M., Sarrami-Foroushani, A., Lassila, T., and Frangi, A. F. (2024). Accelerated simulation methodologies for computational vascular flow modelling. J R Soc Interface, 21:20230565. DOI: 10.1098/rsif.2023.0565.

journals Funding: INSILICO Funding: INSILEX Funding: InSilc Funding: @neurIST Bib

@article{MacRaild2024a,
  doi = {10.1098/rsif.2023.0565},
  pages = {20230565},
  volume = {21},
  month = feb,
  year = {2024},
  journal = {J R Soc Interface},
  title = {Accelerated simulation methodologies for computational vascular flow modelling},
  author = {MacRaild, M. and Sarrami-Foroushani, A. and Lassila, T. and Frangi, A. F.},
  programmes = {cp-twinning, is-modelling},
}

MacRaild, M., Sarrami-Foroushani, A., Lassila, T., and Frangi, A. F. (2024). Reduced order modelling of intracranial aneurysm flow using proper orthogonal decomposition and neural networks. Int J Numer Meth Biomed Eng., 40(10):e3848. DOI: 10.1002/cnm.3848.

journals Funding: INSILICO Bib

@article{MacRaild2024b,
  doi = {10.1002/cnm.3848},
  pages = {e3848},
  number = {10},
  volume = {40},
  month = oct,
  year = {2024},
  journal = {Int J Numer Meth Biomed Eng.},
  title = {Reduced order modelling of intracranial aneurysm flow using proper orthogonal decomposition and neural networks},
  author = {MacRaild, M. and Sarrami-Foroushani, A. and Lassila, T. and Frangi, A. F.},
  programmes = {cp-realworld, is-modelling},
}

Mou, L., Lin, J., Zhao, Y., Liu, Y., Ma, S., and 5 more authors. (2024). COSTA: A Multi-center TOF-MRA Dataset and A Style Self-Consistency Network for Cerebrovascular Segmentation. IEEE Trans Med Imaging., 43(12):4442–4456. DOI: 10.1109/tmi.2024.3424976.

journals Bib

@article{Mou2024a,
  doi = {10.1109/tmi.2024.3424976},
  pages = {4442--4456},
  number = {12},
  volume = {43},
  month = dec,
  year = {2024},
  journal = {IEEE Trans Med Imaging.},
  title = {COSTA: A Multi-center TOF-MRA Dataset and A Style Self-Consistency Network for Cerebrovascular Segmentation},
  author = {Mou, L. and Lin, J. and Zhao, Y. and Liu, Y. and Ma, S. and Zhang, J. and Lv, W. and Zhou, T. and Frangi, A. F. and Zhao, Y.},
  programmes = {cp-realworld},
}

Nabavi, S., Hashemi, M., Moghaddam, M. E., Abin, A. A., and Frangi, A. F. (2024). Automated Cardiac Coverage Assessment in Cardiovascular Magnetic Resonance Imaging using a Recurrent 3D Dual-Domain Convolutional Network. Med Phys., 51(12):8789–8803. DOI: 10.1002/mp.17411.

journals Bib

@article{Navabi2024a,
  doi = {10.1002/mp.17411},
  pages = {8789--8803},
  number = {12},
  volume = {51},
  month = dec,
  year = {2024},
  journal = {Med Phys.},
  title = {Automated Cardiac Coverage Assessment in Cardiovascular Magnetic Resonance Imaging using a Recurrent 3D Dual-Domain Convolutional Network},
  author = {Nabavi, S. and Hashemi, M. and Moghaddam, M. E. and Abin, A. A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Wu, K., Xia, Y., Ravikumar, N., and Frangi, A. F. (2024). Compressed Sensing using a Deep Adaptive Perceptual Generative Adversarial Network for MRI Reconstruction from Undersampled K-space Data. Biomed Signal Process Control., 96:106560. DOI: 10.1016/j.bspc.2024.106560.

journals Bib

@article{Wu2024a,
  doi = {10.1016/j.bspc.2024.106560},
  pages = {106560},
  volume = {96},
  year = {2024},
  journal = {Biomed Signal Process Control.},
  title = {Compressed Sensing using a Deep Adaptive Perceptual Generative Adversarial Network for MRI Reconstruction from Undersampled K-space Data},
  author = {Wu, K. and Xia, Y. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Zhang, L., Bronik, K., Piechnik, S. K., Lima, J. A. C., Neubauer, S., and 2 more authors. (2024). Automatic Plane Pose Estimation for Cardiac Left Ventricle Coverage Estimation via Deep Adversarial Regression Network. IEEE Trans Artif Intell., 5(4):4738–4752. DOI: 10.1109/tai.2024.3394798.

journals Bib

@article{Zhang2024a,
  doi = {10.1109/tai.2024.3394798},
  pages = {4738--4752},
  number = {4},
  volume = {5},
  month = sep,
  year = {2024},
  journal = {IEEE Trans Artif Intell.},
  title = {Automatic Plane Pose Estimation for Cardiac Left Ventricle Coverage Estimation via Deep Adversarial Regression Network},
  author = {Zhang, L. and Bronik, K. and Piechnik, S. K. and Lima, J. A. C. and Neubauer, S. and Petersen, S. E. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Zhang, S., Fang, Y., Nan, Y., Wang, S., Ding, W., and 5 more authors. (2024). Fuzzy Attention-based Border Rendering Orthogonal Network for Lung Organ Segmentation.. IEEE Trans Fuzzy Syst., 32(10):5462–5476. DOI: 10.1109/tfuzz.2024.3433506.

journals Bib

@article{ZhangS2024a,
  doi = {10.1109/tfuzz.2024.3433506},
  pages = {5462--5476},
  number = {10},
  volume = {32},
  month = oct,
  year = {2024},
  journal = {IEEE Trans Fuzzy Syst.},
  title = {Fuzzy Attention-based Border Rendering Orthogonal Network for Lung Organ Segmentation.},
  author = {Zhang, S. and Fang, Y. and Nan, Y. and Wang, S. and Ding, W. and Ong, Y. S. and Frangi, A. F. and Pedrycz, W. and Walsh, S. and Yang, G.},
  programmes = {cp-realworld},
}

Zhao, Y., Hao, J., Kwapong, W., Shen, T., Fu, H., and 10 more authors. (2024). Early Detection of Dementia through Retinal Imaging and Trustworthy AI. Nature Digit Med., 7(1):294. DOI: 10.1038/s41746-024-01292-5.

journals Funding: INSILICO Bib

@article{Zhao2024a,
  doi = {10.1038/s41746-024-01292-5},
  pages = {294},
  number = {1},
  volume = {7},
  month = oct,
  year = {2024},
  journal = {Nature Digit Med.},
  title = {Early Detection of Dementia through Retinal Imaging and Trustworthy AI},
  author = {Zhao, Y. and Hao, J. and Kwapong, W. and Shen, T. and Fu, H. and Xu, Y. and Lu, Q. and Liu, S. and Zhang, J. and Liu, Y. and Zhao, Y. and Zheng, Y. and Frangi, A. F. and Zhang, S. and Qi, H.},
  programmes = {cp-realworld, is-trials},
}

Alzaid, A., Lineham, B., Dogramadzi, S., Pandit, H., Frangi, A. F., and 1 more author. (2024). Hip Implant Segmentation and Gruen Landmarks Detection. IEEE J Biomed Health Inform, 28(1):333–342. DOI: 10.1109/jbhi.2023.3323533.

journals Funding: INSILICO Bib

@article{Alzaid2024a,
  doi = {10.1109/jbhi.2023.3323533},
  pages = {333--342},
  number = {1},
  volume = {28},
  month = jan,
  year = {2024},
  journal = {IEEE J Biomed Health Inform},
  title = {Hip Implant Segmentation and Gruen Landmarks Detection},
  author = {Alzaid, A. and Lineham, B. and Dogramadzi, S. and Pandit, H. and Frangi, A. F. and Xie, S. Q.},
  programmes = {cp-realworld},
}

Xie, J., Yi, Q., Wu, Y., Zheng, Y., Liu, Y., and 11 more authors. (2024). Deep segmentation of OCTA for evaluation and association of changes of retinal microvasculature with Alzheimer’s disease and mild cognitive impairment. Br J Ophthalmol., 108(3):432–439. DOI: 10.1136/bjo-2022-321399.

journals Bib

@article{Xie2024a,
  doi = {10.1136/bjo-2022-321399},
  pages = {432--439},
  number = {3},
  volume = {108},
  month = feb,
  year = {2024},
  journal = {Br J Ophthalmol.},
  title = {Deep segmentation of {OCTA} for evaluation and association of changes of retinal microvasculature with Alzheimer's disease and mild cognitive impairment},
  author = {Xie, J. and Yi, Q. and Wu, Y. and Zheng, Y. and Liu, Y. and Macerollo, A. and Fu, H. and Xu, Y. and Zhang, J. and Behera, A. and Fan, C. and Frangi, A. F. and Liu, J. and Lu, Q. and Qi, H. and Zhao, Y.},
  programmes = {cp-realworld},
}

Dou, H., Ravikumar, N., and Frangi, A. F. (2024). Method and Apparatus for Controlled Generation of Virtual Anatomical Population Models. Patent Application PCT/GB2024/051608. World Intellectual Property Organization.

patents
Chen, X. (2024). Deep Learning in Cardiac Magnetic Resonance Image Analysis and Cardiovascular Disease Diagnosis. PhD Thesis, University of Leeds. Supervised by Ravikumar, N., Frangi, A. F., and Lassila, T.

theses
Bi, N. (2024). Bayesian Deep Learning for Cardiac Motion Modelling and Analysis. PhD Thesis, University of Leeds. Supervised by Zakeri, A., Taylor, Z. A., Frangi, A. F., and Ravikumar, N.

theses
Bonazzola, R. (2024). Statistical learning methods in deep cardiac phenotyping for population imaging and imaging genetics. PhD Thesis, University of Leeds. Supervised by Frangi, A. F., and Ravikumar, N.

theses
MacRaild, M. (2024). Efficient Ensemble Simulation Methods for In-Silico Trials of Endovascular Medical Devices. PhD Thesis, University of Leeds. Supervised by Frangi, A. F., Lassila, T., and Sarrami, A.

theses
Golshani, S. (2024). Accelerating cardiac diffusion MRI: concepts and applications. PhD Thesis, University of Leeds. Supervised by Frangi, A. F., and Schneider, J. E.

theses

2023

Abdar, M., Fahami, M. A., Rundo, L., Radeva, P., Frangi, A. F., and 5 more authors. (2023). Hercules: Deep Hierarchical Attentive Multi-Level Fusion Model with Uncertainty Quantification for Medical Image Classification. IEEE Trans Industr Inform., 19(1):274–285. DOI: 10.1109/tii.2022.3168887.

journals Bib

@article{Abdar2023a,
  doi = {10.1109/tii.2022.3168887},
  pages = {274--285},
  number = {1},
  volume = {19},
  month = jan,
  year = {2023},
  journal = {IEEE Trans Industr Inform.},
  title = {Hercules: Deep Hierarchical Attentive Multi-Level Fusion Model with Uncertainty Quantification for Medical Image Classification},
  author = {Abdar, M. and Fahami, M. A. and Rundo, L. and Radeva, P. and Frangi, A. F. and Acharya, U. and Khosravi, A. and Lam, H.-K. and Jung, A. and Nahavandi, S.},
  programmes = {cp-realworld, is-trials},
}

Aviyente, S., Frangi, A. F., Meijering, E., Muñoz-Barrutia, A., Liebling, M., and 4 more authors. (2023). From Nano to Macro: An Overview of the IEEE Bio Image and Signal Processing Technical Committee. IEEE Signal Process Mag., 40(4):61–71. DOI: 10.1109/msp.2023.3242833.

journals Bib

@article{Aviyente2023a,
  doi = {10.1109/msp.2023.3242833},
  pages = {61--71},
  number = {4},
  volume = {40},
  month = jun,
  year = {2023},
  journal = {IEEE Signal Process Mag.},
  title = {From Nano to Macro: An Overview of the IEEE Bio Image and Signal Processing Technical Committee},
  author = {Aviyente, S. and Frangi, A. F. and Meijering, E. and Muñoz-Barrutia, A. and Liebling, M. and {Van De Ville}, D. and Olivo-Marin, J.-C. and Kovačević, J. and Unser, M.},
  programmes = {cp-realworld},
}

Elhaminia, B., Gilbert, A., Lilley, J., Abdar, M., Frangi, A. F., and 3 more authors. (2023). Toxicity Prediction in Pelvic Radiotherapy Using Multiple Instance Learning and Cascaded Attention Layers.. IEEE J Biomed Health Inform., 27(4):1958-.1966. DOI: 10.1109/jbhi.2023.3238825.

journals Funding: RADNET LEEDS Bib

@article{Elhaminia2023,
  doi = {10.1109/jbhi.2023.3238825},
  pages = {1958-.1966},
  number = {4},
  volume = {27},
  month = apr,
  year = {2023},
  journal = {IEEE J Biomed Health Inform.},
  title = {Toxicity Prediction in Pelvic Radiotherapy Using Multiple Instance Learning and Cascaded Attention Layers.},
  author = {Elhaminia, B. and Gilbert, A. and Lilley, J. and Abdar, M. and Frangi, A. F. and Scarsbrook, A. and Appelt, A. and Gooya, A.},
  programmes = {cp-realworld, is-trials},
}

Farzi, M., Coveney, S., Afzali, M., Zdora, M.-C., Lygate, C. A., and 5 more authors. (2023). Measuring Cardiomyocyte Cellular Characteristics in Cardiac Hypertrophy using Diffusion-Weighted MRI. Magn Res Med., 90(5):2144–2157. DOI: 10.1002/mrm.29775.

journals Funding: INSILEX Bib

@article{Farzi2023a,
  doi = {10.1002/mrm.29775},
  pages = {2144--2157},
  number = {5},
  volume = {90},
  month = nov,
  year = {2023},
  journal = {Magn Res Med.},
  title = {Measuring Cardiomyocyte Cellular Characteristics in Cardiac Hypertrophy using Diffusion-Weighted {MRI}},
  author = {Farzi, M. and Coveney, S. and Afzali, M. and Zdora, M.-C. and Lygate, C. A. and Rau, C. and Frangi, A. F. and Dall’Armellina, E. and Teh, I. and Schneider, J. E.},
  programmes = {cp-realworld, is-modelling},
}

Hartung, T., Deng, J., Mall, R., Frangi, A. F., Emmert-Streib, F., and 1 more author. (2023). Editorial: Insights in AI: Medicine and public health 2022. Front Artif Intell., 2:1166426. DOI: 10.3389/frai.2023.1166426.

journals Bib

@article{Hartung2023a,
  doi = {10.3389/frai.2023.1166426},
  pages = {1166426},
  volume = {2},
  month = may,
  year = {2023},
  journal = {Front Artif Intell.},
  title = {Editorial: Insights in AI: Medicine and public health 2022},
  author = {Hartung, T. and Deng, J. and Mall, R. and Frangi, A. F. and Emmert-Streib, F. and Pham, T. D.},
  programmes = {cp-realworld},
}

Hu, H., Pan, N., and Frangi, A. F. (2023). Fully Automatic initialization and segmentation of left and right ventricles for large-scale cardiac MRI using a deeply supervised network and 3D-ASM. Comput Methods Programs Biomed, 240:107679. DOI: 10.2139/ssrn.4341036.

journals Bib

@article{Hu2023,
  doi = {10.2139/ssrn.4341036},
  pages = {107679},
  volume = {240},
  month = oct,
  year = {2023},
  journal = {Comput Methods Programs Biomed},
  title = {Fully Automatic initialization and segmentation of left and right ventricles for large-scale cardiac MRI using a deeply supervised network and 3D-ASM},
  author = {Hu, H. and Pan, N. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Kassab-Bachi, A., Ravikumar, N., Wilcox, R. K., Frangi, A. F., and Taylor, Z. A. (2023). Contribution of shape features to intradiscal pressure and facets contact pressure in L4/L5 FSUs: An in-silico study. Ann Biomed Eng., 51(1):174–78. DOI: 10.1007/s10439-022-03072-2.

journals Bib

@article{Kassab-Bachi2022a,
  doi = {10.1007/s10439-022-03072-2},
  pages = {174--78},
  number = {1},
  volume = {51},
  month = jan,
  year = {2023},
  journal = {Ann Biomed Eng.},
  title = {Contribution of shape features to intradiscal pressure and facets contact pressure in {L4/L5} FSUs: An in-silico study},
  author = {Kassab-Bachi, A. and Ravikumar, N. and Wilcox, R. K. and Frangi, A. F. and Taylor, Z. A.},
  programmes = {is-modelling},
}

Lin, F., Xia, Y., Song, S., Ravikumar, N., and Frangi, A. F. (2023). High-Throughput 3DRA Segmentation of Brain Vasculature and Aneurysms using Deep Learning. Comput Methods Programs Biomed, 230:107355. DOI: 10.1016/j.cmpb.2023.107355.

journals Funding: INSILEX Funding: @neurIST Bib

@article{Lin2023,
  doi = {10.1016/j.cmpb.2023.107355},
  pages = {107355},
  volume = {230},
  month = mar,
  year = {2023},
  journal = {Comput Methods Programs Biomed},
  title = {High-Throughput 3DRA Segmentation of Brain Vasculature and Aneurysms using Deep Learning},
  author = {Lin, F. and Xia, Y. and Song, S. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Liu, Q., Sarrami-Foroushani, A., Wang, Y., MacRaild, M., Kelly, C., and 8 more authors. (2023). Hemodynamics of thrombus formation in intracranial aneurysms: An in silico observational study. APL Bioeng, 7(3):036102. DOI: 10.1063/5.0144848.

journals Funding: INSILEX Funding: InSilc Funding: @neurIST Bib

@article{Liu2023a,
  doi = {10.1063/5.0144848},
  pages = {036102},
  number = {3},
  volume = {7},
  month = jul,
  year = {2023},
  journal = {APL Bioeng},
  title = {Hemodynamics of thrombus formation in intracranial aneurysms: An <i>in silico</i> observational study},
  author = {Liu, Q. and Sarrami-Foroushani, A. and Wang, Y. and MacRaild, M. and Kelly, C. and Lin, F. and Xia, Y. and Song, S. and Ravikumar, N. and Patankar, T. and Taylor, Z. A. and Lassila, T. and Frangi, A. F.},
  programmes = {is-modelling},
}

Luo, M., Yang, X., Wang, H., Dou, H., Hu, X., and 9 more authors. (2023). RecON: Online learning for sensorless freehand 3D ultrasound reconstruction. Med Image Anal., 87:102810. DOI: 10.1016/j.media.2023.102810.

journals Funding: TUSCA Bib

@article{Luo2023a,
  doi = {10.1016/j.media.2023.102810},
  pages = {102810},
  volume = {87},
  month = jul,
  year = {2023},
  journal = {Med Image Anal.},
  title = {RecON: Online learning for sensorless freehand 3D ultrasound reconstruction},
  author = {Luo, M. and Yang, X. and Wang, H. and Dou, H. and Hu, X. and Huang, Y. and Ravikumar, N. and Xu, S. and Zhang, Y. and Xiong, Y. and Xue, W. and Frangi, A. F. and Ni, D. and Sun, L.},
  programmes = {cp-realworld},
}

Nabavi, S., Simchi, H., Moghaddam, M. E., Abin, A. A., and Frangi, A. F. (2023). A generalised deep meta-learning model for automated quality control of cardiovascular magnetic resonance images. Comput Methods Programs Biomed, 242:107770. DOI: 10.1016/j.cmpb.2023.107770.

journals Bib

@article{Navabi2023a,
  doi = {10.1016/j.cmpb.2023.107770},
  pages = {107770},
  volume = {242},
  month = dec,
  year = {2023},
  journal = {Comput Methods Programs Biomed},
  title = {A generalised deep meta-learning model for automated quality control of cardiovascular magnetic resonance images},
  author = {Nabavi, S. and Simchi, H. and Moghaddam, M. E. and Abin, A. A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Song, X., Zhou, F., Frangi, A. F., Cao, J., Xiao, X., and 3 more authors. (2023). Multi-Center and Multi-Channel Pooling GCN for Early AD Diagnosis Based on Dual-Modality Fused Brain Network. IEEE Trans Med Imaging., 42(2):354–67. DOI: 10.1109/tmi.2022.3187141.

journals Funding: INSILEX Bib

@article{Song2023a,
  doi = {10.1109/tmi.2022.3187141},
  pages = {354--67},
  number = {2},
  volume = {42},
  month = feb,
  year = {2023},
  journal = {IEEE Trans Med Imaging.},
  title = {Multi-Center and Multi-Channel Pooling GCN for Early AD Diagnosis Based on Dual-Modality Fused Brain Network},
  author = {Song, X. and Zhou, F. and Frangi, A. F. and Cao, J. and Xiao, X. and Lei, X. and Wang, T. and Lei, B.},
  programmes = {cp-realworld},
}

Zakeri, A., Hokmabadi, A., Bi, N., Wijesinghea, I., Nix, M. G., and 3 more authors. (2023). DragNet: learning-based deformable registration for realistic cardiac MR sequence generation from a single frame. Med Image Anal., 83:102678. DOI: 10.1016/j.media.2022.102678.

journals Funding: RADNET LEEDS Bib

@article{Zakeri2023b,
  doi = {10.1016/j.media.2022.102678},
  pages = {102678},
  volume = {83},
  month = jan,
  year = {2023},
  journal = {Med Image Anal.},
  title = {{DragNet}: learning-based deformable registration for realistic cardiac MR sequence generation from a single frame},
  author = {Zakeri, A. and Hokmabadi, A. and Bi, N. and Wijesinghea, I. and Nix, M. G. and Petersen, S. E. and Frangi, A. F. and Gooya, A.},
  programmes = {cp-realworld},
}

Zhang, J., Zhao, Y., SHone, F., Li, Z., Frangi, A. F., and 2 more authors. (2023). Physics-informed Deep Learning for Musculoskeletal Modelling: Predicting Muscle Forces and Joint Kinematics from Surface EMG. IEEE Trans. Neural Syst. Rehabilitation Eng., 31:484–493. DOI: 10.1109/tnsre.2022.3226860.

journals Bib

@article{Zhang2023a,
  doi = {10.1109/tnsre.2022.3226860},
  pages = {484--493},
  volume = {31},
  year = {2023},
  journal = {IEEE Trans. Neural Syst. Rehabilitation Eng.},
  title = {Physics-informed Deep Learning for Musculoskeletal Modelling: Predicting Muscle Forces and Joint Kinematics from Surface EMG},
  author = {Zhang, J. and Zhao, Y. and SHone, F. and Li, Z. and Frangi, A. F. and Xie, S. and Zhang, Z.-Q.},
  programmes = {cp-realworld, is-modelling},
}

Zhao, Y., Bao, T., Li, Z., Qian, J., Frangi, A. F., and 2 more authors. (2023). Boosting Personalised Musculoskeletal Modelling with Physics-informed Knowledge Transfer. IEEE Trans Instrum Meas., 72:1–11. DOI: 10.1109/tim.2022.3227604.

journals Bib

@article{Zhao2023a,
  doi = {10.1109/tim.2022.3227604},
  pages = {1--11},
  volume = {72},
  month = jan,
  year = {2023},
  journal = {IEEE Trans Instrum Meas.},
  title = {Boosting Personalised Musculoskeletal Modelling with Physics-informed Knowledge Transfer},
  author = {Zhao, Y. and Bao, T. and Li, Z. and Qian, J. and Frangi, A. F. and Xie, S. and Zhang, Z.-Q.},
  programmes = {cp-realworld, is-modelling},
}

Frangi, A. F., Prince, J. L., and Sonka, M. (Eds.). (2023). Medical Image Analysis (Textbook). London, UK: Academic Press.

ISBN: 978-0-1281-3657-7.

books Bib

@book{Book_Frangi2023a,
  editor = {Frangi, A. F. and Prince, J. L. and Sonka, M.},
  isbn = {978-0-1281-3657-7},
  publisher = {Academic Press},
  location = {London, UK},
  year = {2023},
  title = {Medical Image Analysis (Textbook)},
  programmes = {cp-realworld},
}

Su, R., Zhang, Y., Liu, H., and Frangi, A. F. (Eds.). (2023). Medical Imaging and Computer-Aided Diagnosis. Berlin: Springer-Verlag.

ISBN: 978-9-811-66774-9. Series: Lecture Notes in Electrical Engineering. Volume: 810.

books Bib

@book{Book_Su2023,
  editor = {Su, R. and Zhang, Y. and Liu, H. and Frangi, A. F.},
  isbn = {978-9-811-66774-9},
  volume = {810},
  series = {Lecture Notes in Electrical Engineering},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2023},
  title = {Medical Imaging and Computer-Aided Diagnosis},
  programmes = {cp-realworld},
}

Frangi, A. F., Denison, T., and Lincoln, J. (2023). The Economic Impact of In-silico Technology on the UK and its Lifesciences Sector. InSilicoUK Innovation Network.

patents Bib

@online{Frangi2023b,
  doi = {10.5281/zenodo.7558649},
  institution = {InSilicoUK Innovation Network},
  month = feb,
  year = {2023},
  title = {The Economic Impact of In-silico Technology on the {UK} and its Lifesciences Sector},
  author = {Frangi, A. F. and Denison, T. and Lincoln, J.},
  programmes = {is-trials, is-ecosystems},
}

Frangi, A. F., Denison, T., Brown, P., Turpin, R., Kipping, M., and 20 more authors. (2023). Unlocking the power of computational modelling and simulation across the product lifecycle in life sciences: A UK Landscape Report. Sounder, safer, faster, and more sustainable innovation and regulatory evidence of medicines and healthcare products. InSilicoUK Innovation Network.

reports Bib

@online{Frangi2023c,
  doi = {10.5281/zenodo.7723230},
  institution = {InSilicoUK Innovation Network},
  month = apr,
  year = {2023},
  title = {Unlocking the power of computational modelling and simulation across the product lifecycle in life sciences: A UK Landscape Report. Sounder, safer, faster, and more sustainable innovation and regulatory evidence of medicines and healthcare products},
  author = {Frangi, A. F. and Denison, T. and Brown, P. and Turpin, R. and Kipping, M. and Palmer, M. and Flynn, D. and Afshari, P. and Lane, C. and {De Cunha Maluf-Bergman}, M. and Horner, M. and Levine, S. and Marchal, T. and Bischoff, J. and Bryan, R. and Tunbridge, G. and Pink, J. and Macpherson, S. and Niederer, S. and Shipley, R. and Jozsa, T. and Dall’Ara, E. and Rodriguez, B. and Maeder, T. and Thompson, M.},
  programmes = {is-modelling, is-trials, is-ecosystems},
}

Redrup, E., Mitchell, C., Myles, P., Branson, R., and Frangi, A. F. (2023). Cross-Regulator Workshop: Journeys, experiences and best practices on computer modelled and simulated regulatory evidence— Workshop Report. InSilicoUK Innovation Network.

reports Bib

@online{Frangi2023d,
  doi = {10.5281/zenodo.10121102},
  institution = {InSilicoUK Innovation Network},
  month = sep,
  year = {2023},
  title = {Cross-Regulator Workshop: Journeys, experiences and best practices on computer modelled and simulated regulatory evidence— Workshop Report},
  author = {Redrup, E. and Mitchell, C. and Myles, P. and Branson, R. and Frangi, A. F.},
  programmes = {is-trials, is-ecosystems},
}

Whorwood, H., Frangi, A. F., and Wilkinson, K. (2023). In Silico Medicine: Investment in next-generation life sciences innovations empowered by computational modelling and simulations. Beauhurst.

reports Bib

@online{Whorwood2023a,
  institution = {Beauhurst},
  month = jan,
  year = {2023},
  title = {In Silico Medicine: Investment in next-generation life sciences innovations empowered by computational modelling and simulations},
  author = {Whorwood, H. and Frangi, A. F. and Wilkinson, K.},
  programmes = {is-modelling, is-trials, is-ecosystems},
}

Xia, Y., Ravikumar, N., and Frangi, A. F. (2023). Method and apparatus for generating subject-specific magnetic resonance angiography images from other multi-contrast magnetic resonance images. Patent Application No 18/242,982. US Patent and Trademark Office.

patents
Dou, H., Ravikumar, N., and Frangi, A. F. (2023). Method and Apparatus for Generating Virtual Populations of Anatomy. Patent Application PCT/EP2023/077300. World Intellectual Property Organization.

patents
Frood, R. T. (2023). The use of machine learning/deep learning in PET/CT interpretation to aid in outcome prediction in lymphoma. PhD Thesis, University of Leeds. Supervised by Scarsbrook, A., Frangi, A. F., Tsoumpas, C., and Gleeson, F.

theses
Lashgari, M. (2023). An In Silico Imaging Framework for Microstructure-Sensitive Myocardial Diffusion-Weighted MRI. PhD Thesis, University of Leeds. Supervised by Frangi, A. F., Schneider, J. E., Ravikumar, N., and Teh, I.

theses

2022

Diaz-Pinto, A., Attar, R., Ravikumar, N., Suinesiaputra, A., Zhao, Y., and 11 more authors. (2022). Predicting Infarction through your Retinal Scans and Minimal Personal Information. Nat Machine Intel., 4(1):55–61. Available at: https://doi.org/10.1038/s42256-021-00427-7.

journals Bib

@article{DiazPinto2021a,
  url = {https://doi.org/10.1038/s42256-021-00427-7},
  pages = {55--61},
  number = {1},
  volume = {4},
  month = apr,
  year = {2022},
  journal = {Nat Machine Intel.},
  title = {Predicting Infarction through your Retinal Scans and Minimal Personal Information},
  author = {Diaz-Pinto, A. and Attar, R. and Ravikumar, N. and Suinesiaputra, A. and Zhao, Y. and Levelt, E. and {Dall'Armellina}, E. and Lorenzi, M. and Chen, Q. and Keenan, T. D. L. and {Agr\'{o}n}, E. and Chew, E. Y. and Lu, Z. and Gale, C. P. and Plein, S. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Farzi, M., Pozo, J. M., McCoskey, E. V., Eastell, R., Harvey, N. C., and 2 more authors. (2022). Quantitating Age-Related BMD Textural Variation from DXA Region-Free-Analysis: A Study of Hip Fracture Prediction in Three Cohorts. J Bone Miner Res., 37(9):1679–1688. DOI: 10.1002/jbmr.4638.

journals Funding: INSILEX Bib

@article{Farzi2022a,
  doi = {10.1002/jbmr.4638},
  pages = {1679--1688},
  number = {9},
  volume = {37},
  month = sep,
  year = {2022},
  journal = {J Bone Miner Res.},
  title = {Quantitating Age-Related BMD Textural Variation from DXA Region-Free-Analysis: A Study of Hip Fracture Prediction in Three Cohorts},
  author = {Farzi, M. and Pozo, J. M. and McCoskey, E. V. and Eastell, R. and Harvey, N. C. and Frangi, A. F. and Wilkinson, J. M.},
  programmes = {cp-realworld},
}

Frood, R., Clark, M., Burton, C., Tsoumpas, C., Frangi, A. F., and 3 more authors. (2022). Discovery of Pre-Treatment FDG PET/CT-Derived Radiomics-Based Models for Predicting Outcome in Diffuse Large B-Cell. Cancers, 14(7):1711. DOI: 10.3390/cancers14071711.

journals Funding: INSILEX Bib

@article{Frood2022a,
  doi = {10.3390/cancers14071711},
  pages = {1711},
  number = {7},
  volume = {14},
  year = {2022},
  journal = {Cancers},
  title = {Discovery of Pre-Treatment FDG PET/CT-Derived Radiomics-Based Models for Predicting Outcome in Diffuse Large B-Cell},
  author = {Frood, R. and Clark, M. and Burton, C. and Tsoumpas, C. and Frangi, A. F. and Gleeson, F. and Patel, C. and Scarsbrook, A. F.},
  programmes = {cp-realworld},
}

Frood, R., Clark, M., Burton, C., Tsoumpas, C., Frangi, A. F., and 3 more authors. (2022). Utility of pre-treatment FDG PET/CT–derived machine learning models for outcome prediction in classical Hodgkin lymphoma. Eur Radiol, 32(10):7237–7247. DOI: 10.1007/s00330-022-09039-0.

journals Bib

@article{Frood2022b,
  doi = {10.1007/s00330-022-09039-0},
  pages = {7237--7247},
  number = {10},
  volume = {32},
  month = oct,
  year = {2022},
  journal = {Eur Radiol},
  title = {Utility of pre-treatment FDG PET/CT–derived machine learning models for outcome prediction in classical Hodgkin lymphoma},
  author = {Frood, R. and Clark, M. and Burton, C. and Tsoumpas, C. and Frangi, A. F. and Gleeson, F. and Patel, C. and Scarsbrook, A.},
  programmes = {cp-realworld},
}

Harkness, R., Hall, G., Frangi, A., Ravikumar, N., and Zucker, K. (2022). The Pitfalls of Using Open Data to Develop Deep Learning Solutions for COVID-19 Detection in Chest X-Rays. Stud Health Technol Inform., 6:679–83. DOI: 10.3233/shti220164.

journals Bib

@article{Harkness2022a,
  doi = {10.3233/shti220164},
  pages = {679--83},
  volume = {6},
  month = jun,
  year = {2022},
  journal = {Stud Health Technol Inform.},
  title = {The Pitfalls of Using Open Data to Develop Deep Learning Solutions for COVID-19 Detection in Chest X-Rays},
  author = {Harkness, R. and Hall, G. and Frangi, A. and Ravikumar, N. and Zucker, K.},
  programmes = {cp-realworld, is-trials},
}

Huang, Z., Lei, H., Chen, G., Frangi, A. F., Xu, Y., and 3 more authors. (2022). Parkinson’s Disease Classification and Clinical Score Regression via United Embedding and Sparse Learning from Longitudinal Data. IEEE Trans Neural Netw Learn Syst., 33(8):3357–3371. DOI: 10.1109/tnnls.2021.3052652.

journals Funding: INSILEX Bib

@article{Huang2022a,
  doi = {10.1109/tnnls.2021.3052652},
  pages = {3357--3371},
  number = {8},
  volume = {33},
  month = aug,
  year = {2022},
  journal = {IEEE Trans Neural Netw Learn Syst.},
  title = {Parkinson's Disease Classification and Clinical Score Regression via United Embedding and Sparse Learning from Longitudinal Data},
  author = {Huang, Z. and Lei, H. and Chen, G. and Frangi, A. F. and Xu, Y. and Elazab, A. and Qin, J. and Lei, B.},
  programmes = {cp-realworld},
}

Lashgari, M., Ravikumar, N., Teh, I., Li, J.-R., Buckley, D. L., and 2 more authors. (2022). Three-dimensional micro-structurally informed in silico myocardium– towards virtual imaging trials in cardiac diffusion-weighted MRI. Med Image Anal., 82:102592. DOI: 10.1016/j.media.2022.102592.

journals Funding: RADNET LEEDS Funding: OCEAN Bib

@article{Lashgari2022a,
  doi = {10.1016/j.media.2022.102592},
  pages = {102592},
  volume = {82},
  month = nov,
  year = {2022},
  journal = {Med Image Anal.},
  title = {Three-dimensional micro-structurally informed in silico myocardium-- towards virtual imaging trials in cardiac diffusion-weighted MRI},
  author = {Lashgari, M. and Ravikumar, N. and Teh, I. and Li, J.-R. and Buckley, D. L. and Schneider, J. E. and Frangi, A. F.},
  programmes = {cp-twinning, is-modelling, is-trials},
}

Luo, X., Stoyanov, D., Hata, N., Frangi, A. F., Taylor, R. H., and 1 more author. (2022). Guest Editorial Special Section on Surgical Vision, Navigation, and Robotics. IEEE Trans Med Robot Bionics., 4(1):2–4. DOI: 10.1109/TMRB.2022.3147605.

journals Bib

@article{Luo2022a,
  doi = {10.1109/TMRB.2022.3147605},
  pages = {2--4},
  number = {1},
  volume = {4},
  month = feb,
  year = {2022},
  journal = {IEEE Trans Med Robot Bionics.},
  title = {Guest Editorial Special Section on Surgical Vision, Navigation, and Robotics},
  author = {Luo, X. and Stoyanov, D. and Hata, N. and Frangi, A. F. and Taylor, R. H. and Peters, T. M.},
  programmes = {cp-realworld},
}

Xia, Y., Ravikumar, N., and Frangi, A. F. (2022). Learning to complete incomplete hearts for population analysis of cardiac MR images. Med Image Anal., 77:102354. DOI: 10.1016/j.media.2022.102354.

journals Bib

@article{Xia2022a,
  doi = {10.1016/j.media.2022.102354},
  pages = {102354},
  volume = {77},
  month = apr,
  year = {2022},
  journal = {Med Image Anal.},
  title = {Learning to complete incomplete hearts for population analysis of cardiac {MR} images},
  author = {Xia, Y. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Xia, Y., Chen, X., Ravikumar, N., Kelly, C., Attar, R., and 4 more authors. (2022). Automatic 3D+t Four-Chamber CMR Quantification of the UK Biobank: integrating imaging and non-imaging data priors at scale. Med Image Anal., 80:102498. DOI: 10.1016/j.media.2022.102498.

journals Funding: MedIAN Bib

@article{Xia2022b,
  doi = {10.1016/j.media.2022.102498},
  pages = {102498},
  volume = {80},
  month = may,
  year = {2022},
  journal = {Med Image Anal.},
  title = {Automatic {3D+t} Four-Chamber {CMR} Quantification of the {UK Biobank}: integrating imaging and non-imaging data priors at scale},
  author = {Xia, Y. and Chen, X. and Ravikumar, N. and Kelly, C. and Attar, R. and Aung, N. and Neubauer, S. and Petersen, S. E. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Zakeri, A., Hokmabadi, A., Ravikumar, N., Frangi, A. F., and Gooya, A. (2022). A probabilistic deep motion model for unsupervised cardiac shape anomaly assessment. Med Image Anal., 75:e052887. DOI: 10.1016/j.media.2021.102276.

journals Funding: INSILEX Funding: Cardio-X Bib

@article{Zakeri2022a,
  doi = {10.1016/j.media.2021.102276},
  pages = {e052887},
  volume = {75},
  month = jan,
  year = {2022},
  journal = {Med Image Anal.},
  title = {A probabilistic deep motion model for unsupervised cardiac shape anomaly assessment},
  author = {Zakeri, A. and Hokmabadi, A. and Ravikumar, N. and Frangi, A. F. and Gooya, A.},
  programmes = {cp-realworld, is-modelling},
}

Kakileti, S. K., Gabrani, M., Manjunath, G., Rosen-Zvi, M., Braman, N., and 5 more authors. (Eds.). (2022). Artificial Intelligence over Infrared Images for Medical Applications and Medical Image Assisted Biomarker Discovery. Berlin: Springer-Verlag.

ISBN: 978-3-031-19660-7. Series: Lecture Notes in Computer Science. Volume: 13602.

books Bib

@book{Book_Kakileti2022a,
  editor = {Kakileti, S. K. and Gabrani, M. and Manjunath, G. and Rosen-Zvi, M. and Braman, N. and Schwartz, R. G. and Frangi, A. F. and Chung, P.-C. and Weight, C. and Jagadish, V.},
  isbn = {978-3-031-19660-7},
  volume = {13602},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2022},
  title = {Artificial Intelligence over Infrared Images for Medical Applications and Medical Image Assisted Biomarker Discovery},
  programmes = {cp-realworld},
}

Xia, Y., Ravikumar, N., and Frangi, A. F. (2022). Image imputation in cardiac MRI and quality assessment. In Burgos, N., and Svoboda, D. (Eds.). Biomedical Image Synthesis and Simulation. (pp. 347–367). Academic Press.

Series: The MICCAI Society Book Series.

chapters Bib

@inbook{Xia2022z,
  doi = {10.1016/b978-0-12-824349-7.00024-4},
  editor = {Burgos, N. and Svoboda, D.},
  pages = {347--367},
  series = {The MICCAI Society Book Series},
  publisher = {Academic Press},
  booktitle = {Biomedical Image Synthesis and Simulation},
  year = {2022},
  title = {Image imputation in cardiac MRI and quality assessment},
  author = {Xia, Y. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Diaz-Pinto, A., Ravikumar, N., and Frangi, A. F. (2022). Determination of Cardiac Functional Indexes. Patent Filed No PCT/IB2022/053356. World Intellectual Property Organization.

patents

2021

Attanasio, A., Alberti, C., Scaglioni, B., Marahrens, N., Frangi, A. F., and 4 more authors. (2021). A Comparative Study of Spatio-Temporal U-Nets for Tissue Segmentation in Surgical Robotics. IEEE Trans Med Robotics Bionics., 3(1):53–63. DOI: 10.1109/tmrb.2021.3054326.

journals Funding: INSILEX Bib

@article{Attanasio2021a,
  doi = {10.1109/tmrb.2021.3054326},
  pages = {53--63},
  number = {1},
  volume = {3},
  month = feb,
  year = {2021},
  journal = {IEEE Trans Med Robotics Bionics.},
  title = {A Comparative Study of Spatio-Temporal U-Nets for Tissue Segmentation in Surgical Robotics},
  author = {Attanasio, A. and Alberti, C. and Scaglioni, B. and Marahrens, N. and Frangi, A. F. and Leonetti, M. and Biyani, C. and {De Momi}, E. and Valdastri, P.},
  programmes = {cp-realworld},
}

Chen, X., Diaz-Pinto, A., Ravikumar, N., and Frangi, A. F. (2021). Deep learning in medical image registration. Prog. Biomed. Eng., 3:012003. DOI: 10.1088/2516-1091/abd37c.

journals Funding: MedIAN Bib

@article{Chen2021b,
  doi = {10.1088/2516-1091/abd37c},
  pages = {012003},
  volume = {3},
  day = {5},
  month = feb,
  year = {2021},
  journal = {Prog. Biomed. Eng.},
  title = {Deep learning in medical image registration},
  author = {Chen, X. and Diaz-Pinto, A. and Ravikumar, N. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Danilov, V. V., Klyshnikov, K. Y., Gerget, O. M., Kutikhin, A. G., Ganyukov, V. I., and 2 more authors. (2021). Real-time coronary artery stenosis detection based on modern neural networks. Sci Rep., 11(1):7582. DOI: 10.21203/rs.3.rs-130610/v1.

journals Bib

@article{Danilov2021a,
  doi = {10.21203/rs.3.rs-130610/v1},
  pages = {7582},
  number = {1},
  volume = {11},
  month = apr,
  year = {2021},
  journal = {Sci Rep.},
  title = {Real-time coronary artery stenosis detection based on modern neural networks},
  author = {Danilov, V. V. and Klyshnikov, K. Y. and Gerget, O. M. and Kutikhin, A. G. and Ganyukov, V. I. and Frangi, A. F. and Ovcharenko, E.},
  programmes = {cp-realworld},
}

Danilov, V. V., Gerget, O. M., Klyshnikov, K. Y., Frangi, A. F., and Ovcharenko, E. A. (2021). Analysis of Deep Neural Networks for Detection of Coronary Artery Stenosis. Program Comput Softw., 47:153–160. DOI: 10.1134/s0361768821030038.

journals Bib

@article{Danilov2021b,
  doi = {10.1134/s0361768821030038},
  pages = {153--160},
  volume = {47},
  year = {2021},
  journal = {Program Comput Softw.},
  title = {Analysis of Deep Neural Networks for Detection of Coronary Artery Stenosis},
  author = {Danilov, V. V. and Gerget, O. M. and Klyshnikov, K. Y. and Frangi, A. F. and Ovcharenko, E. A.},
  programmes = {cp-realworld},
}

Dembowska, S., Frangi, A. F., Houwing-Duistermaat, J., and Liu, H. (2021). Multivariate functional partial least squares for classification using longitudinal data. Theor Biol Forum., 114(1–2):75–88.

journals Bib

@article{Dembowska2021a,
  pages = {75--88},
  number = {1--2},
  volume = {114},
  month = jan,
  year = {2021},
  journal = {Theor Biol Forum.},
  title = {Multivariate functional partial least squares for classification using longitudinal data},
  author = {Dembowska, S. and Frangi, A. F. and Houwing-Duistermaat, J. and Liu, H.},
  programmes = {cp-realworld},
}

Frood, R., Burton, C., Tsoumpas, C., Frangi, A. F., Gleeson, F., and 2 more authors. (2021). Baseline PET/CT imaging parameters for prediction of treatment outcome in Hodgkin and diffuse large B-cell lymphoma: A Systematic Review. Eur J Nucl Med Mol Imaging., 48(10):3198–3220. DOI: 10.1007/s00259-021-05233-2.

journals Bib

@article{Frood2021a,
  doi = {10.1007/s00259-021-05233-2},
  pages = {3198--3220},
  number = {10},
  volume = {48},
  month = sep,
  year = {2021},
  journal = {Eur J Nucl Med Mol Imaging.},
  title = {Baseline {PET/CT} imaging parameters for prediction of treatment outcome in Hodgkin and diffuse large B-cell lymphoma: A Systematic Review},
  author = {Frood, R. and Burton, C. and Tsoumpas, C. and Frangi, A. F. and Gleeson, F. and Patel, C. and Scarsbrook, A.},
  programmes = {cp-realworld},
}

Guo, L., Lei, B., Chen, W., Dua, J., Frangi, A. F., and 5 more authors. (2021). Dual Attention Enhancement Feature Fusion Network for Segmentation and Quantitative Analysis of Paediatric Echocardiography. Med Image Anal., 71:102042. DOI: 10.1016/j.media.2021.102042.

journals Bib

@article{Guo21a,
  doi = {10.1016/j.media.2021.102042},
  pages = {102042},
  volume = {71},
  month = jul,
  year = {2021},
  journal = {Med Image Anal.},
  title = {Dual Attention Enhancement Feature Fusion Network for Segmentation and Quantitative Analysis of Paediatric Echocardiography},
  author = {Guo, L. and Lei, B. and Chen, W. and Dua, J. and Frangi, A. F. and Qin, J. and Zhao, C. and Shi, P. and Xia, B. and Wang, T.},
  programmes = {cp-realworld},
}

Hu, H., Pan, N., Lui, H., Liu, L., Yin, T., and 2 more authors. (2021). Automatic segmentation of left and right ventricles in cardiac MRI using 3D-ASM and deep learning. Signal Process Image Commun., 96:116303. DOI: 10.1016/j.image.2021.116303.

journals Bib

@article{Hu2021a,
  doi = {10.1016/j.image.2021.116303},
  pages = {116303},
  volume = {96},
  month = aug,
  year = {2021},
  journal = {Signal Process Image Commun.},
  title = {Automatic segmentation of left and right ventricles in cardiac {MRI} using {3D-ASM} and deep learning},
  author = {Hu, H. and Pan, N. and Lui, H. and Liu, L. and Yin, T. and Tu, Z. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Lei, B., Cheng, N., Frangi, A. F., Wei, Y., Yu, B., and 10 more authors. (2021). Auto-weighted Centralised Multi-Task Learning via Integrating Functional and Structural Connectivity for Subjective Cognitive Decline Diagnosis. Med Image Anal., 74:102248. DOI: 10.1016/j.media.2021.102248.

journals Bib

@article{Lei2021a,
  doi = {10.1016/j.media.2021.102248},
  pages = {102248},
  volume = {74},
  month = dec,
  year = {2021},
  journal = {Med Image Anal.},
  title = {Auto-weighted Centralised Multi-Task Learning via Integrating Functional and Structural Connectivity for Subjective Cognitive Decline Diagnosis},
  author = {Lei, B. and Cheng, N. and Frangi, A. F. and Wei, Y. and Yu, B. and Liang, L. and Mai, W. and Duan, G. and Nong, X. and Li, C. and Su, J. and Wang, T. and Zhao, L. and Deng, D. and Zhang, Z.},
  programmes = {cp-realworld},
}

Mendonca, T. V., Jones, A. A., Pozo, J. M., Baxendale, S., Whilfield, T. T., and 1 more author. (2021). Origami: Single-cell 3D shape dynamics oriented along the apico-basal axis of folding epithelia from fluorescence microscopy. PLoS Comp Biol., 17(11):e1009063. DOI: 10.1371/journal.pcbi.1009063.

journals Funding: INSILEX Funding: MedIAN Bib

@article{Mendonca2021a,
  doi = {10.1371/journal.pcbi.1009063},
  pages = {e1009063},
  number = {11},
  volume = {17},
  month = apr,
  year = {2021},
  journal = {PLoS Comp Biol.},
  title = {Origami: Single-cell 3D shape dynamics oriented along the apico-basal axis of folding epithelia from fluorescence microscopy},
  author = {Mendonca, T. V. and Jones, A. A. and Pozo, J. M. and Baxendale, S. and Whilfield, T. T. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Nabavi, S., Ejmalian, A., Moghaddam, M. E., Abin, A. A., Frangi, A. F., and 2 more authors. (2021). Medical imaging and computational image analysis in COVID-19 diagnosis: A review. Comput Biol Med., 135:104605. DOI: 10.1016/j.compbiomed.2021.104605.

journals Bib

@article{Nabavi2021a,
  doi = {10.1016/j.compbiomed.2021.104605},
  pages = {104605},
  volume = {135},
  month = jun,
  year = {2021},
  journal = {Comput Biol Med.},
  title = {Medical imaging and computational image analysis in {COVID-19} diagnosis: A review},
  author = {Nabavi, S. and Ejmalian, A. and Moghaddam, M. E. and Abin, A. A. and Frangi, A. F. and Mohammadi, M. and Rad, H. S.},
  programmes = {cp-realworld},
}

Nadarajah, R., Wu, J., Frangi, A. F., Hogg, D., Cowan, C., and 1 more author. (2021). Predicting patient-level new-onset atrial fibrillation from population-based nationwide electronic health records: protocol of FIND-AF for developing a precision medicine prediction model using artificial intelligence. BMJ Open., 11(11):e052887. DOI: 10.1136/bmjopen-2021-052887.

journals Bib

@article{Nadarajah2021a,
  doi = {10.1136/bmjopen-2021-052887},
  pages = {e052887},
  number = {11},
  volume = {11},
  month = nov,
  year = {2021},
  journal = {BMJ Open.},
  title = {Predicting patient-level new-onset atrial fibrillation from population-based nationwide electronic health records: protocol of FIND-AF for developing a precision medicine prediction model using artificial intelligence},
  author = {Nadarajah, R. and Wu, J. and Frangi, A. F. and Hogg, D. and Cowan, C. and Gale, C.},
  programmes = {cp-realworld, is-trials},
}

Pal, A., Chaturved, A., Chandra, A., Chatterjee, R., Senapat, S., and 2 more authors. (2021). MICaps: Multi-Instance Capsule Network for Machine Inspection of Munro’s Microabscess. Comp Biol Med., 140:105071. DOI: 10.1016/j.compbiomed.2021.105071.

journals Bib

@article{Pal2021a,
  doi = {10.1016/j.compbiomed.2021.105071},
  pages = {105071},
  volume = {140},
  month = nov,
  year = {2021},
  journal = {Comp Biol Med.},
  title = {{MICaps}: Multi-Instance Capsule Network for Machine Inspection of {M}unro’s Microabscess},
  author = {Pal, A. and Chaturved, A. and Chandra, A. and Chatterjee, R. and Senapat, S. and Frangi, A. F. and Garain, U.},
  programmes = {cp-realworld},
}

Sarrami-Foroushani, A., Lassila, T., MacRaild, M., Asquith, J., Roes, K. C. B., and 2 more authors. (2021). In-silico trial of intracranial flow diverters replicates and expands insights from conventional clinical trials: Supplementary material. Nat Comm., 12(1):3861. DOI: 10.1038/s41467-021-23998-w.

journals Funding: INSILEX Funding: @neurIST Bib

@article{Sarrami2021a,
  doi = {10.1038/s41467-021-23998-w},
  pages = {3861},
  number = {1},
  volume = {12},
  month = jun,
  year = {2021},
  journal = {Nat Comm.},
  title = {In-silico trial of intracranial flow diverters replicates and expands insights from conventional clinical trials: Supplementary material},
  author = {Sarrami-Foroushani, A. and Lassila, T. and MacRaild, M. and Asquith, J. and Roes, K. C. B. and Byrne, J. V. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Smye, S. W., and Frangi, A. F. (2021). Interdisciplinary research: shaping the healthcare of the future. Future Healthc J., 8(2):e218–e223. DOI: 10.7861/fhj.2021-0025.

journals Funding: MedIAN Bib

@article{Smye2021a,
  doi = {10.7861/fhj.2021-0025},
  pages = {e218--e223},
  number = {2},
  volume = {8},
  month = jul,
  year = {2021},
  journal = {Future Healthc J.},
  title = {Interdisciplinary research: shaping the healthcare of the future},
  author = {Smye, S. W. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Song, X., Zhou, F., Frangi, A. F., Cao, J., Xiao, X., and 3 more authors. (2021). Graph Convolution Network with Similarity Awareness and Adaptive Calibration for Disease-induced Deterioration Prediction. Med Image Anal., 61(101947). DOI: 10.1016/j.media.2020.101947.

journals Bib

@article{Song2021a,
  doi = {10.1016/j.media.2020.101947},
  number = {101947},
  volume = {61},
  month = apr,
  year = {2021},
  journal = {Med Image Anal.},
  title = {Graph Convolution Network with Similarity Awareness and Adaptive Calibration for Disease-induced Deterioration Prediction},
  author = {Song, X. and Zhou, F. and Frangi, A. F. and Cao, J. and Xiao, X. and Lei, Y. and Wang, T. and Lei, B.},
  programmes = {cp-realworld},
}

Van den Eynde, J., Manlhiot, C., Van De Bruaene, A., Diller, G.-P., Frangi, A. F., and 2 more authors. (2021). Medicine-Based Evidence in Congenital Heart Disease: How Artificial Intelligence Can Guide Treatment Decision. Front Cardiovasc Med., 8:798215. DOI: 10.3389/fcvm.2021.798215.

journals Bib

@article{VandenEynde2021a,
  doi = {10.3389/fcvm.2021.798215},
  pages = {798215},
  volume = {8},
  month = dec,
  year = {2021},
  journal = {Front Cardiovasc Med.},
  title = {Medicine-Based Evidence in Congenital Heart Disease: How Artificial Intelligence Can Guide Treatment Decision},
  author = {{Van den Eynde}, J. and Manlhiot, C. and {Van De Bruaene}, A. and Diller, G.-P. and Frangi, A. F. and Budts, W. and Kutty, S.},
  programmes = {cp-realworld, is-trials},
}

Vukicevic, A. M., Zelic, K., Milasinovic, D., Sarrami‐Foroushani, A., Jovicic, G., and 4 more authors. (2021). OpenMandible: An open-source framework for highly realistic numerical modelling of lower mandible physiology. Dent Mater., 37(4):612–624. DOI: 10.1016/j.dental.2021.01.009.

journals Bib

@article{Vukicevic2021a,
  doi = {10.1016/j.dental.2021.01.009},
  pages = {612--624},
  number = {4},
  volume = {37},
  month = apr,
  year = {2021},
  journal = {Dent Mater.},
  title = {OpenMandible: An open-source framework for highly realistic numerical modelling of lower mandible physiology},
  author = {Vukicevic, A. M. and Zelic, K. and Milasinovic, D. and Sarrami‐Foroushani, A. and Jovicic, G. and Milovanovic, P. and Djuric, M. and Filipovic, N. and Frangi, A. F.},
  programmes = {cp-realworld, is-modelling},
}

Yang, X., Li, H., Wang, Y., Liang, K., Chen, C., and 6 more authors. (2021). Contrastive Rendering with Semi-supervised Learning for Ovary and Follicle Segmentation from 3D Ultrasound. Med Image Anal., 73:102134. DOI: 10.1016/j.media.2021.102134.

journals Bib

@article{YanX2021a,
  doi = {10.1016/j.media.2021.102134},
  pages = {102134},
  volume = {73},
  month = jun,
  year = {2021},
  journal = {Med Image Anal.},
  title = {Contrastive Rendering with Semi-supervised Learning for Ovary and Follicle Segmentation from {3D} Ultrasound},
  author = {Yang, X. and Li, H. and Wang, Y. and Liang, K. and Chen, C. and Zhou, X. and Zeng, F. and Fang, J. and Frangi, A. F. and Chen, Z. and Ni, D.},
  programmes = {cp-realworld},
}

Frangi, A. F. (2021). Am (A)I human? Building Safer and More Effective Medical Devices with Virtual Twins. Pint of Science, Leeds. Available at: https://pintofscience.co.uk/event/hear-me-out.

outreach Bib

@online{Frangi2021c,
  organization = {Pint of Science, Leeds},
  url = {https://pintofscience.co.uk/event/hear-me-out},
  month = may,
  year = {2021},
  title = {Am (A)I human? Building Safer and More Effective Medical Devices with Virtual Twins},
  author = {Frangi, A. F.},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

(2021). Clinical Trials for Medicines and New Medical Procedures. BBC World Service Radio. Available at: https://www.bbc.co.uk/programmes/w172xv2pndhs8lj.

outreach Bib

@online{Frangi2021i,
  organization = {BBC World Service Radio},
  url = {https://www.bbc.co.uk/programmes/w172xv2pndhs8lj},
  day = {24},
  month = jun,
  year = {2021},
  title = {Clinical Trials for Medicines and New Medical Procedures},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

(2021). Os ensaios clı́nicos virtuais estão a caminho (e podem ser mais práticos e baratos). aeiou. Available at: https://zap.aeiou.pt/ensaios-clinicos-virtuais-a-caminho-418520.

outreach Bib

@online{Frangi2021g,
  organization = {aeiou},
  url = {https://zap.aeiou.pt/ensaios-clinicos-virtuais-a-caminho-418520},
  month = jun,
  year = {2021},
  title = {Os ensaios cl\'{\i}nicos virtuais est\~{a}o a caminho (e podem ser mais pr\'{a}ticos e baratos)},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

(2021). Using virtual populations for clinical trials. Science Daily. Available at: https://www.sciencedaily.com/releases/2021/06/210623091139.htm.

outreach Bib

@online{Frangi2021f,
  organization = {Science Daily},
  url = {https://www.sciencedaily.com/releases/2021/06/210623091139.htm},
  month = jun,
  year = {2021},
  title = {Using virtual populations for clinical trials},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

(2021). Rewrite the Rules. Lifesciences Integrates. Available at: https://www.lifescienceintegrates.com/medtech-integrates-agenda-2021/#rewrite.

outreach Bib

@online{Frangi2021d,
  organization = {Lifesciences Integrates},
  url = {https://www.lifescienceintegrates.com/medtech-integrates-agenda-2021/#rewrite},
  month = jun,
  year = {2021},
  title = {Rewrite the Rules},
  programmes = {is-trials, is-ecosystems},
}

(2021). Replace, Reduce, Refine: In-Silico Trials in The Spotlight. Clinical OMICs. Available at: https://www.clinicalomics.com/topics/patient-care/cardiovascular-disease/replace-reduce-refine-in-silico-trials-in-the-spotlight.

outreach Bib

@online{Frangi2021e,
  organization = {Clinical OMICs},
  url = {https://www.clinicalomics.com/topics/patient-care/cardiovascular-disease/replace-reduce-refine-in-silico-trials-in-the-spotlight},
  month = jul,
  year = {2021},
  title = {Replace, Reduce, Refine: In-Silico Trials in The Spotlight},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

(2021). ’Huge potential’ in virtual clinical trials. University of Leeds. Available at: https://www.leeds.ac.uk/news-health/news/article/4850/huge-potential-in-virtual-clinical-trials.

outreach Bib

@online{Frangi2021b,
  organization = {University of Leeds},
  url = {https://www.leeds.ac.uk/news-health/news/article/4850/huge-potential-in-virtual-clinical-trials},
  month = jul,
  year = {2021},
  title = {'Huge potential' in virtual clinical trials},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

(2021). Virtual clinical trials are on their way. The Economist. Available at: https://www.economist.com/science-and-technology/2021/07/01/virtual-clinical-trials-are-on-their-way.

outreach Bib

@online{Frangi2021a,
  organization = {The Economist},
  url = {https://www.economist.com/science-and-technology/2021/07/01/virtual-clinical-trials-are-on-their-way},
  month = jul,
  year = {2021},
  title = {Virtual clinical trials are on their way},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

(2021). Virtual Patients for Evaluating Medical Devices. BBC Digital Planet. Available at: https://www.bbc.co.uk/programmes/w3ct1lsg.

outreach Bib

@online{Frangi2021j,
  organization = {BBC Digital Planet},
  url = {https://www.bbc.co.uk/programmes/w3ct1lsg},
  day = {28},
  month = aug,
  year = {2021},
  title = {Virtual Patients for Evaluating Medical Devices},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

2020

Abadi, E., Segars, W. P., Tsui, B. M. W., Kinahan, P. E., Bottenus, N., and 4 more authors. (2020). Virtual clinical trials in medical imaging: a review.. J Medical Imaging., 7(4):042805. DOI: 10.1117/1.jmi.7.4.042805.

journals Bib

@article{Abadi2020a,
  doi = {10.1117/1.jmi.7.4.042805},
  pages = {042805},
  number = {4},
  volume = {7},
  month = jul,
  year = {2020},
  journal = {J Medical Imaging.},
  title = {Virtual clinical trials in medical imaging: a review.},
  author = {Abadi, E. and Segars, W. P. and Tsui, B. M. W. and Kinahan, P. E. and Bottenus, N. and Frangi, A. F. and Maidment, A. and Lo, J. and Samei, E.},
  programmes = {cp-realworld, cp-twinning, is-trials},
}

Asif, M., Chen, L., Song, H., Yang, J., and Frangi, A. F. (2020). An Automatic Framework for Endoscopic Image Restoration and Enhancement. Appl Intell., 51(1959-–1971). DOI: 10.1007/s10489-020-01923-w.

journals Bib

@article{Asif2020a,
  doi = {10.1007/s10489-020-01923-w},
  number = {1959-–1971},
  volume = {51},
  month = apr,
  year = {2020},
  journal = {Appl Intell.},
  title = {An Automatic Framework for Endoscopic Image Restoration and Enhancement},
  author = {Asif, M. and Chen, L. and Song, H. and Yang, J. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Attanasio, A., Scaglione, B., Leonetti, M., Frangi, A. F., Cross, W., and 2 more authors. (2020). Autonomous Tissue Retraction in Robotic Assisted Minimally Invasive Surgery - A Feasibility Study.. IEEE Robot Autom Lett., 5(4):6528–35. DOI: 10.1109/lra.2020.3013914.

journals Bib

@article{Attanasio2020a,
  doi = {10.1109/lra.2020.3013914},
  pages = {6528--35},
  number = {4},
  volume = {5},
  month = oct,
  year = {2020},
  journal = {IEEE Robot Autom Lett.},
  title = {Autonomous Tissue Retraction in Robotic Assisted Minimally Invasive Surgery - A Feasibility Study.},
  author = {Attanasio, A. and Scaglione, B. and Leonetti, M. and Frangi, A. F. and Cross, W. and Biyani, C. S. and Valdastri, P.},
  programmes = {cp-realworld},
}

Fu, T., Yang, J., Li, Q., Ai, D., Song, H., and 3 more authors. (2020). Groupwise Registration with Global-local Graph Shrinkage in Atlas Construction.. Med Image Anal., 64:101711. DOI: 10.1016/j.media.2020.101711.

journals Funding: MedIAN Bib

@article{Fu2020a,
  doi = {10.1016/j.media.2020.101711},
  pages = {101711},
  volume = {64},
  month = aug,
  year = {2020},
  journal = {Med Image Anal.},
  title = {Groupwise Registration with Global-local Graph Shrinkage in Atlas Construction.},
  author = {Fu, T. and Yang, J. and Li, Q. and Ai, D. and Song, H. and Jiang, Y. and Wang, Y. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Hu, Y., Lei, B., Guo, L., Mao, M., Jin, Z., and 4 more authors. (2020). AIDAN: An Attention-guided Dual-path Network for Pediatric Echocardiography Segmentation. IEEE Access., 8(1):29176–29187. DOI: 10.1109/access.2020.2971383.

journals Funding: INSILEX Funding: InSilc Bib

@article{Hu2020,
  doi = {10.1109/access.2020.2971383},
  pages = {29176--29187},
  number = {1},
  volume = {8},
  month = dec,
  year = {2020},
  journal = {IEEE Access.},
  title = {AIDAN: An Attention-guided Dual-path Network for Pediatric Echocardiography Segmentation},
  author = {Hu, Y. and Lei, B. and Guo, L. and Mao, M. and Jin, Z. and Du, J. and Xia, B. and Frangi, A. F. and Wang, T.},
  programmes = {cp-realworld},
}

Lassila, T., Sarrami-Foroushani, A., Hejazi, S. M., and Frangi, A. F. (2020). Population-specific modelling of between/within-subject flow variability in the carotid arteries of the elderly.. Int J Num Meth Biomed Eng., 36(1):e3271. DOI: 10.1002/cnm.3271.

journals Funding: MedIAN Funding: MedIAN Bib

@article{Lassila2019,
  doi = {10.1002/cnm.3271},
  pages = {e3271},
  number = {1},
  volume = {36},
  month = jan,
  year = {2020},
  journal = {Int J Num Meth Biomed Eng.},
  title = {Population-specific modelling of between/within-subject flow variability in the carotid arteries of the elderly.},
  author = {Lassila, T. and Sarrami-Foroushani, A. and Hejazi, S. M. and Frangi, A. F.},
  programmes = {is-modelling},
}

Lei, B., Cheng, N., Frangi, A. F., Tanc, E.-L., Yang, P., and 4 more authors. (2020). Self-calibrated Brain Network Estimation and Joint Non-Convex Multi-Task Learning for Identification of Early Alzheimer’s Disease. Med Image Anal., 61:101652. DOI: 10.1016/j.media.2020.101652.

journals Funding: MedIAN Funding: OCEAN Funding: MedIAN Bib

@article{Lei2020a,
  doi = {10.1016/j.media.2020.101652},
  pages = {101652},
  volume = {61},
  month = apr,
  year = {2020},
  journal = {Med Image Anal.},
  title = {Self-calibrated Brain Network Estimation and Joint Non-Convex Multi-Task Learning for Identification of Early Alzheimer's Disease},
  author = {Lei, B. and Cheng, N. and Frangi, A. F. and Tanc, E.-L. and Yang, P. and Elazab, A. and Dua, J. and Xu, Y. and Wang, T.},
  programmes = {cp-realworld},
}

Lei, B., Yu, S., Zhao, X., Frangi, A. F., Tanc, E.-L., and 3 more authors. (2020). Early Alzheimer’s Disease Diagnosis Based on Dynamic High Order Networks. Brain Imaging Behav., 15(1):276–287.

journals Bib

@article{Lei2020b,
  pages = {276--287},
  number = {1},
  volume = {15},
  month = feb,
  year = {2020},
  journal = {Brain Imaging Behav.},
  title = {Early Alzheimer's Disease Diagnosis Based on Dynamic High Order Networks},
  author = {Lei, B. and Yu, S. and Zhao, X. and Frangi, A. F. and Tanc, E.-L. and Elazab, A. and Wang, T. and Wang, S.},
  programmes = {cp-realworld},
}

Li, F., Song, D., Chen, H., Xiong, J., Li, X., and 35 more authors. (2020). Development and clinical deployment of a smartphone-based visual field deep learning system for glaucoma detection (iGlaucoma): a multicenter study. Nature Digit Med., 22(3):123.

journals Bib

@article{Li2020a,
  pages = {123},
  number = {3},
  volume = {22},
  month = sep,
  year = {2020},
  journal = {Nature Digit Med.},
  title = {Development and clinical deployment of a smartphone-based visual field deep learning system for glaucoma detection ({iGlaucoma}): a multicenter study},
  author = {Li, F. and Song, D. and Chen, H. and Xiong, J. and Li, X. and Zhong, H. and Tang, G. and Fan, S. and Lam, D. S. C. and Pan, W. and Zheng, Y. and Li, Y. and Qu, G. and He, J. and Wang, Z. and Jin, L. and Zhou, R. and Song, Y. and Sun, Y. and Cheng, W. and Yang, C. and Fan, Y. and Li, Y. and Zhang, H. and Yuan, Y. and Xu, Y. and Xiong, Y. and Jin, L. and Lv, A. and Niu, L. and Liu, Y. and Li, S. and Zhang, J. and Zangwill, L. M. and Frangi, A. F. and Aung, T. and Cheng, C.-Y. and Qiao, Y. and Zhang, X. and Ting, D. S. W.},
  programmes = {cp-realworld},
}

Littlejohns, T., Holliday, J., Gibson, L., Garratt, S., Oesingmann, N., and 19 more authors. (2020). The UK Biobank imaging enhancement of 100,000 participants: rationale, data collection, management and future directions.. Nat Comm., 11(1):2624–. DOI: 10.1038/s41467-020-15948-9.

journals Funding: INSILEX Funding: InSilc Funding: BackUP Funding: MedIAN Funding: VPH-DARE@IT Bib

@article{Littlejohns2020a,
  doi = {10.1038/s41467-020-15948-9},
  pages = {2624--},
  number = {1},
  volume = {11},
  month = may,
  year = {2020},
  journal = {Nat Comm.},
  title = {The UK Biobank imaging enhancement of 100,000 participants: rationale, data collection, management and future directions.},
  author = {Littlejohns, T. and Holliday, J. and Gibson, L. and Garratt, S. and Oesingmann, N. and Alfaro-Almagro, F. and Bell, J. and Boultwood, C. and Collins, R. and Conroy, M. and Crabtree, N. and Doherty, R. and Frangi, A. F. and Harvey, N. and Leeson, L. and Miller, L. and Neubauer, S. and Petersen, S. E. and Sellors, J. and Sheard, J. and Smith, S. and Sudlow, C. and Matthews, P. and Allen, N.},
  programmes = {cp-realworld, is-ecosystems},
}

Mou, L., Zhao, Y., Fu, H., Liu, Y., Cheng, J., and 7 more authors. (2020). CS2-Net: Deep Learning Segmentation of Curvilinear Structures in Medical Imaging. Med Image Anal., 67:101874.

journals Bib

@article{Mou2020a,
  pages = {101874},
  volume = {67},
  month = jan,
  year = {2020},
  journal = {Med Image Anal.},
  title = {CS2-Net: Deep Learning Segmentation of Curvilinear Structures in Medical Imaging},
  author = {Mou, L. and Zhao, Y. and Fu, H. and Liu, Y. and Cheng, J. and Zheng, Y. and Su, P. and Yang, J. and Cheng, L. and Frangi, A. F. and Akiba, M. and Liu, J.},
  programmes = {cp-realworld},
}

Vukicevic, A. M., Milic, V., Zabotti, A., Hocevar, A., De Lucia, O., and 5 more authors. (2020). Radiomics-based assessment of Primary Sjögren’s Syndrome from salivary gland ultrasonography images.. IEEE J Biomed Health Inform., 24(3):835–843. DOI: 10.1109/jbhi.2019.2923773.

journals Funding: MedIAN Funding: MedIAN Bib

@article{Vukicevic2020,
  doi = {10.1109/jbhi.2019.2923773},
  pages = {835--843},
  number = {3},
  volume = {24},
  month = mar,
  year = {2020},
  journal = {IEEE J Biomed Health Inform.},
  title = {Radiomics-based assessment of Primary Sjögren’s Syndrome from salivary gland ultrasonography images.},
  author = {Vukicevic, A. M. and Milic, V. and Zabotti, A. and Hocevar, A. and {De Lucia}, O. and Filippou, G. and Frangi, A. F. and Tzioufas, A. and {De Vita}, S. and Filipovic, N.},
  programmes = {cp-realworld},
}

Wang, C., Oda, M., Hayashi, Y., Yoshino, Y., Yamamoto, T., and 2 more authors. (2020). Tensor-cut: A Tensor-based Graph-cut Blood Vessel Segmentation Method and Its Application to Renal Artery Segmentation. Med Image Anal., 60:101623. DOI: 10.1016/j.media.2019.101623.

journals Funding: MedIAN Funding: MedIAN Bib

@article{Wang2020,
  doi = {10.1016/j.media.2019.101623},
  pages = {101623},
  volume = {60},
  month = feb,
  year = {2020},
  journal = {Med Image Anal.},
  title = {Tensor-cut: A Tensor-based Graph-cut Blood Vessel Segmentation Method and Its Application to Renal Artery Segmentation},
  author = {Wang, C. and Oda, M. and Hayashi, Y. and Yoshino, Y. and Yamamoto, T. and Frangi, A. F. and Mori, K.},
  programmes = {cp-realworld},
}

Xia, Y., Zhang, L., Ravikumar, N., Attar, R., Piechnik, S., and 3 more authors. (2020). Recovering from Missing Data in Population Imaging - Cardiac MR Image Imputation via Conditional Generative Adversarial Nets. Med Image Anal., 67:101812. DOI: 10.1016/j.media.2020.101812.

journals Funding: MedIAN Bib

@article{Xia2020a,
  doi = {10.1016/j.media.2020.101812},
  pages = {101812},
  volume = {67},
  month = jan,
  year = {2020},
  journal = {Med Image Anal.},
  title = {Recovering from Missing Data in Population Imaging - Cardiac MR Image Imputation via Conditional Generative Adversarial Nets},
  author = {Xia, Y. and Zhang, L. and Ravikumar, N. and Attar, R. and Piechnik, S. and Neubauer, S. and Petersen, P. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Attar, R. (2020). Quantitative Analysis of Cardiac Magnetic Resonance in Population Imaging. PhD Thesis, University of Leeds. Supervised by Frangi, A. F.

theses

2019

Attar, R., Perenez, M., Gooya, A., Alba, X., Zhang, L., and 11 more authors. (2019). Quantitative CMR Population Imaging on 20,000 Subjects of the UK Biobank Imaging Study: LV/RV Quantification Pipeline and its Evaluation. Med Image Anal., 25(56):26–42. DOI: 10.1016/j.media.2019.05.006.

journals Bib

@article{Attar2019,
  doi = {10.1016/j.media.2019.05.006},
  pages = {26--42},
  number = {56},
  volume = {25},
  month = may,
  year = {2019},
  journal = {Med Image Anal.},
  title = {Quantitative CMR Population Imaging on 20,000 Subjects of the UK Biobank Imaging Study: LV/RV Quantification Pipeline and its Evaluation},
  author = {Attar, R. and Perenez, M. and Gooya, A. and Alba, X. and Zhang, L. and Hoz, M. and Lee, A. M. and Aung, N. and Lukaschuk, E. and Sanghvi, M. M. and Fung, K. and Paiva, J. M. and Piechnik, S. K. and Neubauer, S. and Petersen, S. E. and Frangi, A. F.},
  programmes = {cp-realworld, is-ecosystems},
}

Coelho, S., Pozo, J. M., Jespersen, S. N., Jones, D. K., and Frangi, A. F. (2019). Resolving degeneracy in diffusion MRI biophysical model parameter estimation using double diffusion encoding.. Magn Res Med., 82(1):395–41. DOI: 10.1002/mrm.27714.

journals Bib

@article{Coelho2019a,
  doi = {10.1002/mrm.27714},
  pages = {395--41},
  number = {1},
  volume = {82},
  month = jul,
  year = {2019},
  journal = {Magn Res Med.},
  title = {Resolving degeneracy in diffusion {MRI} biophysical model parameter estimation using double diffusion encoding.},
  author = {Coelho, S. and Pozo, J. M. and Jespersen, S. N. and Jones, D. K. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Coelho, S., Pozo, J. M., Costantini, M., Highley, J. R., Mozumder, M., and 3 more authors. (2019). Histological data of axons, astrocytes, and myelin in deep subcortical white matter populations.. Data Brief, 6(23):103762. DOI: 10.1016/j.dib.2019.103762.

journals Bib

@article{Coelho2019b,
  doi = {10.1016/j.dib.2019.103762},
  pages = {103762},
  number = {23},
  volume = {6},
  month = mar,
  year = {2019},
  journal = {Data Brief},
  title = {Histological data of axons, astrocytes, and myelin in deep subcortical white matter populations.},
  author = {Coelho, S. and Pozo, J. M. and Costantini, M. and Highley, J. R. and Mozumder, M. and Simpson, J. and Ince, P. G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Diaz-Pinto, A. Y., Colomer, A., Naranjo, V., Morales, S., Xu, Y., and 1 more author. (2019). Retinal Image Synthesis and Semi-supervised Learning for Glaucoma Assessment.. IEEE Trans Med Imaging., 38(9):2211–2218. DOI: 10.1109/tmi.2019.2903434.

journals Bib

@article{Diaz-Pinto2019a,
  doi = {10.1109/tmi.2019.2903434},
  pages = {2211--2218},
  number = {9},
  volume = {38},
  month = sep,
  year = {2019},
  journal = {IEEE Trans Med Imaging.},
  title = {Retinal Image Synthesis and Semi-supervised Learning for Glaucoma Assessment.},
  author = {Diaz-Pinto, A. Y. and Colomer, A. and Naranjo, V. and Morales, S. and Xu, Y. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Aime, S., Alberich, A., Almen, A., Arthurs, O., Barthel, H., and 40 more authors. (2019). Strategic research agenda for biomedical imaging. Insights into Imaging, 10(7). DOI: 10.1186/s13244-019-0684-z.

journals Bib

@article{EIBIR2019a,
  doi = {10.1186/s13244-019-0684-z},
  number = {7},
  volume = {10},
  year = {2019},
  journal = {Insights into Imaging},
  title = {Strategic research agenda for biomedical imaging},
  author = {Aime, S. and Alberich, A. and Almen, A. and Arthurs, O. and Barthel, H. and Clément, O. and Crean, M. and {de Souza}, N. and Demuth, F. and Dewey, M. and Dousset, V. and Frangi, A. and Garos, C. and Golay, X. and Gordebeke, P. and Günther, M. and Hahn, H. and Hierath, M. and Hoeschen, C. and Hunink, M. and Kauczor, H. and Krestin, G. and Krischak, K. and Langs, G. and Liu, Y. and Marti-Bonmati, L. and Matos, C. and Mayerhofer-Sebera, U. and McNulty, J. and Muylle, K. and Neeman, M. and Niessen, W. J. and Nikolaou, K. and Pereira, P. and Persson, A. and Pifferi, A. and Riklund, K. and Rockall, A. and Rosendahl, K. and Sardanelli, F. and Sourbron, S. and Speck, O. and Valentini, V. and Zolda, P. and {The European Institute for Biomedical Imaging Research (EIBIR)}},
  programmes = {cp-realworld, is-trials, is-ecosystems},
}

Farzi, M., Pozo, J. M., McCloskey, E., Eastell, R., Harvey, N., and 2 more authors. (2019). A Spatio-Temporal Ageing Atlas of the Proximal Femur.. IEEE Trans Med Imaging., 39(5):1359–1368. DOI: 10.1109/tmi.2019.2945219.

journals Bib

@article{Farzi2019,
  doi = {10.1109/tmi.2019.2945219},
  pages = {1359--1368},
  number = {5},
  volume = {39},
  month = may,
  year = {2019},
  journal = {IEEE Trans Med Imaging.},
  title = {A Spatio-Temporal Ageing Atlas of the Proximal Femur.},
  author = {Farzi, M. and Pozo, J. M. and McCloskey, E. and Eastell, R. and Harvey, N. and Wilkinson, J. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Fathi-Kazerooni, A., Pozo, J. M., McCloskey, E. V., Saligheh-Rad, H., and Frangi, A. F. (2019). Diffusion MRI For Assessment of Bone Quality; A Review of Findings in Healthy Aging and Osteoporosis.. J Magn Res Imaging., 51(4):975–992. DOI: 10.1002/jmri.26973.

journals Bib

@article{Fathi-Kazerooni2019,
  doi = {10.1002/jmri.26973},
  pages = {975--992},
  number = {4},
  volume = {51},
  month = apr,
  year = {2019},
  journal = {J Magn Res Imaging.},
  title = {Diffusion MRI For Assessment of Bone Quality; A Review of Findings in Healthy Aging and Osteoporosis.},
  author = {Fathi-Kazerooni, A. and Pozo, J. M. and McCloskey, E. V. and Saligheh-Rad, H. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Fehri, H., Gooya, A., Lu, Y., Meijering, E. H. W., Johnston, S., and 1 more author. (2019). Bayesian Polytrees with Learned Deep Features for Multi-Class Cell Segmentation.. IEEE Trans Image Process., 28(7):3246–3260. DOI: 10.1109/tip.2019.2895455.

journals Bib

@article{Fehri2019a,
  doi = {10.1109/tip.2019.2895455},
  pages = {3246--3260},
  number = {7},
  volume = {28},
  month = jul,
  year = {2019},
  journal = {{IEEE} Trans Image Process.},
  title = {Bayesian Polytrees with Learned Deep Features for Multi-Class Cell Segmentation.},
  author = {Fehri, H. and Gooya, A. and Lu, Y. and Meijering, E. H. W. and Johnston, S. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Fichtinger, G., Schnabel, J., Davatzikos, C., Frangi, A. F., and Alberola-López, C. (2019). Editorial IJCARS-MICCAI 2018 Special Issue. Int J Comput Assist Radiol Surg., 14(9):1461.

journals Bib

@article{Fichtinger2019a,
  pages = {1461},
  number = {9},
  volume = {14},
  month = sep,
  year = {2019},
  journal = {Int J Comput Assist Radiol Surg.},
  title = {Editorial IJCARS-MICCAI 2018 Special Issue},
  author = {Fichtinger, G. and Schnabel, J. and Davatzikos, C. and Frangi, A. F. and Alberola-López, C.},
  programmes = {cp-realworld},
}

Mozumder, M., Pozo, J. M., Coelho, S., Costantini, M., Simpson, J., and 3 more authors. (2019). Quantitative histomorphometry of capillary microstructure in deep white matter. NeuroImage: Clin., 25(23):101839. DOI: 10.1016/j.nicl.2019.101839.

journals Bib

@article{Mozumder2019a,
  doi = {10.1016/j.nicl.2019.101839},
  pages = {101839},
  number = {23},
  volume = {25},
  month = apr,
  year = {2019},
  journal = {NeuroImage: Clin.},
  title = {Quantitative histomorphometry of capillary microstructure in deep white matter},
  author = {Mozumder, M. and Pozo, J. M. and Coelho, S. and Costantini, M. and Simpson, J. and Highley, R. and Ince, P. G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Mozumder, M., Pozo, J. M., Coelho, S., and Frangi, A. F. (2019). Population-based Bayesian regularization for microstructural diffusion MRI with NODDIDA. Magn Res Med., 82(4):1553–1565. DOI: 10.1002/mrm.27831.

journals Bib

@article{Mozumder2019b,
  doi = {10.1002/mrm.27831},
  pages = {1553--1565},
  number = {4},
  volume = {82},
  month = oct,
  year = {2019},
  journal = {Magn Res Med.},
  title = {Population-based Bayesian regularization for microstructural diffusion MRI with NODDIDA},
  author = {Mozumder, M. and Pozo, J. M. and Coelho, S. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Ravikumar, N., Gooya, A., Beltrachini, L., Frangi, A. F., and Taylor, Z. A. (2019). Generalised coherent point drift for group-wise multi-dimensional analysis of diffusion brain MRI data.. Med Image Anal.(53):47–63. DOI: 10.1016/j.media.2019.01.001.

journals Bib

@article{Ravikumar2019a,
  doi = {10.1016/j.media.2019.01.001},
  pages = {47--63},
  number = {53},
  month = apr,
  year = {2019},
  journal = {Med Image Anal.},
  title = {Generalised coherent point drift for group-wise multi-dimensional analysis of diffusion brain MRI data.},
  author = {Ravikumar, N. and Gooya, A. and Beltrachini, L. and Frangi, A. F. and Taylor, Z. A.},
  programmes = {cp-realworld},
}

Sarrami-Foroushani, A., Lassila, T., Hejazi, S. M., Nagaraja, S., Bacon, A., and 1 more author. (2019). A computational model for prediction of clot platelet content in flow-diverted intracranial aneurysms. J Biomech., 25(91):7–13. DOI: 10.1016/j.jbiomech.2019.04.045.

journals Bib

@article{Sarrami2019a,
  doi = {10.1016/j.jbiomech.2019.04.045},
  pages = {7--13},
  number = {91},
  volume = {25},
  month = jun,
  year = {2019},
  journal = {J Biomech.},
  title = {A computational model for prediction of clot platelet content in flow-diverted intracranial aneurysms},
  author = {Sarrami-Foroushani, A. and Lassila, T. and Hejazi, S. M. and Nagaraja, S. and Bacon, A. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Schnabel, J., Davatzikos, C., Fichtinger, G., Frangi, A. F., and Alberola-López, C. (2019). Editorial: Special Issue on MICCAI 2018.. Med Image Anal., 58:101560.

journals Bib

@article{Schnabel2019a,
  pages = {101560},
  volume = {58},
  month = dec,
  year = {2019},
  journal = {Med Image Anal.},
  title = {Editorial: Special Issue on MICCAI 2018.},
  author = {Schnabel, J. and Davatzikos, C. and Fichtinger, G. and Frangi, A. F. and Alberola-López, C.},
  programmes = {cp-realworld},
}

Shaukat, F., Raja, G., and Frangi, A. F. (2019). Computer-Aided Detection of Lung Nodules: A Review.. J Med Imaging., 6(2):020901. DOI: 10.1117/1.jmi.6.2.020901.

journals Bib

@article{Shaukat2019,
  doi = {10.1117/1.jmi.6.2.020901},
  pages = {020901},
  number = {2},
  volume = {6},
  month = jun,
  year = {2019},
  journal = {J Med Imaging.},
  title = {Computer-Aided Detection of Lung Nodules: A Review.},
  author = {Shaukat, F. and Raja, G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Song, S., Du, C., Liu, X., Huang, Y., Song, H., and 5 more authors. (2019). Deep Motion Tracking from Multiview Angiographic Image Sequences for Synchronization of Cardiac Phases.. Phys Med Biol., 64(2):025018. DOI: 10.1088/1361-6560/aafa06.

journals Bib

@article{Song2019a,
  doi = {10.1088/1361-6560/aafa06},
  pages = {025018},
  number = {2},
  volume = {64},
  month = jan,
  year = {2019},
  journal = {Phys Med Biol.},
  title = {Deep Motion Tracking from Multiview Angiographic Image Sequences for Synchronization of Cardiac Phases.},
  author = {Song, S. and Du, C. and Liu, X. and Huang, Y. and Song, H. and Jiang, Y. and Ai, D. and Frangi, A. F. and Wang, Y. and Yang, J.},
  programmes = {cp-realworld},
}

Song, S., Frangi, A. F., Yang, J., Ai, D., Du, C., and 5 more authors. (2019). Patch-Based Adaptive Background Subtraction for Vascular Enhancement in X-Ray Cineangiograms.. IEEE J Biomed Health Inform., 23(6):2563–2575. DOI: 10.1109/jbhi.2019.2892072.

journals Bib

@article{Song2019b,
  doi = {10.1109/jbhi.2019.2892072},
  pages = {2563--2575},
  number = {6},
  volume = {23},
  month = nov,
  year = {2019},
  journal = {IEEE J Biomed Health Inform.},
  title = {Patch-Based Adaptive Background Subtraction for Vascular Enhancement in X-Ray Cineangiograms.},
  author = {Song, S. and Frangi, A. F. and Yang, J. and Ai, D. and Du, C. and Huang, Y. and Song, H. and Zhang, L. and Han, Y. and Wang, Y.},
  programmes = {cp-realworld},
}

Vardakis, J. C., Guo, L., Peach, T. W., Lassila, T., Mitolo, M., and 6 more authors. (2019). Fluid-Structure Interaction for Highly Complex, Statistically Defined, Biological Media: Homogenisation and a 3D Multi-Compartmental Poroelastic Model for Brain Biomechanics. J Fluids Struct, 91:102641. DOI: 10.1016/j.jfluidstructs.2019.04.008.

journals Bib

@article{Vardakis2019a,
  doi = {10.1016/j.jfluidstructs.2019.04.008},
  pages = {102641},
  volume = {91},
  month = nov,
  year = {2019},
  journal = {J Fluids Struct},
  title = {Fluid-Structure Interaction for Highly Complex, Statistically Defined, Biological Media: Homogenisation and a 3D Multi-Compartmental Poroelastic Model for Brain Biomechanics},
  author = {Vardakis, J. C. and Guo, L. and Peach, T. W. and Lassila, T. and Mitolo, M. and Chou, D. and Taylor, Z. A. and Varma, S. and Venneri, A. and Frangi, A. F. and Ventikos, Y.},
  programmes = {is-modelling},
}

Vardakis, J. C., Bonfanti, M., Franzetti, G., Guo, L., Lassila, T., and 12 more authors. (2019). Highly integrated workflows for exploring cardiovascular conditions: Exemplars of precision medicine in Alzheimer’s disease and aortic dissection.. Morphologie., 103(343):148–160. DOI: 10.1016/j.morpho.2019.10.045.

journals Bib

@article{Vardakis2019b,
  doi = {10.1016/j.morpho.2019.10.045},
  pages = {148--160},
  number = {343},
  volume = {103},
  month = dec,
  year = {2019},
  journal = {Morphologie.},
  title = {Highly integrated workflows for exploring cardiovascular conditions: Exemplars of precision medicine in Alzheimer's disease and aortic dissection.},
  author = {Vardakis, J. C. and Bonfanti, M. and Franzetti, G. and Guo, L. and Lassila, T. and Mitolo, M. and {Hoz de Vila}, M. and Greenwood, J. P. and Maritati, G. and Chou, D. and Taylor, Z. A. and Venneri, A. and Homer-Vanniasinkam, S. and Balabani, S. and Frangi, A. F. and Ventikos, Y. and Diaz-Zuccarini, V.},
  programmes = {cp-realworld},
}

Venneri, A., Mitolo, M., Beltrachini, L., Varma, S., Della Pieta, C., and 3 more authors. (2019). Beyond Episodic Memory: Semantic Processing as Independent redictor of Hippocampal/Perirhinal Volume in Aging and Mild Cognitive Impairmenet due to Alzheimer’s Disease. Neuropsychol., 33(4):523–533. DOI: 10.1037/neu0000534.

journals Bib

@article{Venneri2018a,
  doi = {10.1037/neu0000534},
  pages = {523--533},
  number = {4},
  volume = {33},
  month = may,
  year = {2019},
  journal = {Neuropsychol.},
  title = {Beyond Episodic Memory: Semantic Processing as Independent redictor of Hippocampal/Perirhinal Volume in Aging and Mild Cognitive Impairmenet due to Alzheimer’s Disease},
  author = {Venneri, A. and Mitolo, M. and Beltrachini, L. and Varma, S. and {Della Pieta}, C. and Jahn-Carta, C. and Frangi, A. F. and {De Marco}, M.},
  programmes = {cp-realworld},
}

Waller, R., Baxter, L., Fillingham, D. J., Coelho, S., Pozo, J. M., and 5 more authors. (2019). Iba-1-/CD68+ microglia are a prominent feature of age-associated deep subcortical white matter lesions.. PLOS One., 14(1):e0210888. DOI: 10.1371/journal.pone.0210888.

journals Bib

@article{Waller2019a,
  doi = {10.1371/journal.pone.0210888},
  pages = {e0210888},
  number = {1},
  volume = {14},
  year = {2019},
  journal = {PLOS One.},
  title = {Iba-1-/CD68+ microglia are a prominent feature of age-associated deep subcortical white matter lesions.},
  author = {Waller, R. and Baxter, L. and Fillingham, D. J. and Coelho, S. and Pozo, J. M. and Mozumder, M. and Frangi, A. F. and Ince, P. G. and Simpson, J. E. and Highley, J. R.},
  programmes = {cp-realworld},
}

Yan, Q., Zhao, Y., Zheng, Y., Liu, Y., Zhou, K., and 2 more authors. (2019). Automated retinal lesion detection via image saliency analysis.. Med Phys., 46(10):4531–44. DOI: 10.1002/mp.13746.

journals Bib

@article{Yan2019,
  doi = {10.1002/mp.13746},
  pages = {4531--44},
  number = {10},
  volume = {46},
  month = oct,
  year = {2019},
  journal = {Med Phys.},
  title = {Automated retinal lesion detection via image saliency analysis.},
  author = {Yan, Q. and Zhao, Y. and Zheng, Y. and Liu, Y. and Zhou, K. and Frangi, A. F. and Liu, J.},
  programmes = {cp-realworld},
}

Zhang, L., Gooya, A., Pereanez, M., Dong, B., Piechnik, S. K., and 3 more authors. (2019). Automatic Assessment of Full Left Ventricular Coverage in Cardiac Cine Magnetic Resonance Imaging with Fisher- Discriminative 3D CNN.. IEEE Trans Biomedical Eng., 60(7):1975–86. DOI: 10.1109/tbme.2018.2881952.

journals Bib

@article{Zhang2019a,
  doi = {10.1109/tbme.2018.2881952},
  pages = {1975--86},
  number = {7},
  volume = {60},
  month = jul,
  year = {2019},
  journal = {IEEE Trans Biomedical Eng.},
  title = {Automatic Assessment of Full Left Ventricular Coverage in Cardiac Cine Magnetic Resonance Imaging with Fisher- Discriminative 3D CNN.},
  author = {Zhang, L. and Gooya, A. and Pereanez, M. and Dong, B. and Piechnik, S. K. and Neubauer, S. and Petersen, S. E. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Zhang, L. (2019). Image quality assessment for population cardiac MRI: from detection to synthesis. PhD Thesis, University of Sheffield. Supervised by Frangi, A. F., and Jewell, G.

theses
Coelho, S. (2019). Diffusion MRI for Well-posed and Optimal White Matter Microstructure Characterisation: Beyond Single Diffusion Encoding. PhD Thesis, University of Leeds. Supervised by Frangi, A. F., and Pozo, J. M.

theses

2018

Alba, X., Lekadir, K., Young, A. A., Pereañez, M., Medrano-Gracia, P., and 1 more author. (2018). Automatic Initialization and Quality Control of Large-Scale Cardiac MRI Segmentations.. Med Image Anal.(43):129–145. DOI: 10.1016/j.media.2017.10.001.

journals Bib

@article{Alba2018,
  doi = {10.1016/j.media.2017.10.001},
  pages = {129--145},
  number = {43},
  month = jan,
  year = {2018},
  journal = {Med Image Anal.},
  title = {Automatic Initialization and Quality Control of Large-Scale Cardiac {MRI} Segmentations.},
  author = {Alba, X. and Lekadir, K. and Young, A. A. and Pereañez, M. and Medrano-Gracia, P. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Chen, X., Pengfei, J., Yiping, W., Henghui, Z., Liao, W., and 2 more authors. (2018). A Surface-based Approach to Determine Key Spatial Parameters of the Acetabulum in a Standardized Pelvic Coordinate.. Med Eng Phys., 52:22–30. DOI: 10.1016/j.medengphy.2017.11.009.

journals Bib

@article{Chen2017,
  doi = {10.1016/j.medengphy.2017.11.009},
  pages = {22--30},
  volume = {52},
  month = feb,
  year = {2018},
  journal = {Med Eng Phys.},
  title = {A Surface-based Approach to Determine Key Spatial Parameters of the Acetabulum in a Standardized Pelvic Coordinate.},
  author = {Chen, X. and Pengfei, J. and Yiping, W. and Henghui, Z. and Liao, W. and Taylor, Z. A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Coelho, S., Pozo, J. M., Costantini, M., Mozumder, M., Highley, J. R., and 2 more authors. (2018). Local volume fraction distributions of axons, astrocytes, and myelin in deep subcortical white matter.. Neuroimage, 179:275–287. DOI: 10.1016/j.neuroimage.2018.06.040.

journals Bib

@article{Coelho2018a,
  doi = {10.1016/j.neuroimage.2018.06.040},
  pages = {275--287},
  volume = {179},
  month = oct,
  year = {2018},
  journal = {Neuroimage},
  title = {Local volume fraction distributions of axons, astrocytes, and myelin in deep subcortical white matter.},
  author = {Coelho, S. and Pozo, J. M. and Costantini, M. and Mozumder, M. and Highley, J. R. and Ince, P. G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Fathi-Kazerooni, A., Nabil, M., Zeinali-Zadeh, M., Firouznia, K., Azmoudeh-Ardalan, F., and 3 more authors. (2018). Characterization of Active and Infiltrative Tumorous Subregions from Normal Tissue in Brain Gliomas Using Multi-Parametric MRI.. J Mag Res Imaging., 48(4):938–950. DOI: 10.1002/jmri.25963.

journals Bib

@article{Fathi-Kazerooni2018,
  doi = {10.1002/jmri.25963},
  pages = {938--950},
  number = {4},
  volume = {48},
  year = {2018},
  journal = {J Mag Res Imaging.},
  title = {Characterization of Active and Infiltrative Tumorous Subregions from Normal Tissue in Brain Gliomas Using Multi-Parametric {MRI}.},
  author = {Fathi-Kazerooni, A. and Nabil, M. and Zeinali-Zadeh, M. and Firouznia, K. and Azmoudeh-Ardalan, F. and Frangi, A. F. and Davatzikos, C. and Saligheh-Rad, H.},
  programmes = {cp-realworld},
}

Frangi, A. F., Tsaftaris, S. A., and Prince, J. L. (2018). Editorial: Special issue on Simulation and Synthesis in Medical Imaging.. IEEE Trans Med Imaging., 37(3):673–679.

journals Bib

@article{Frangi2018,
  pages = {673--679},
  number = {3},
  volume = {37},
  month = mar,
  year = {2018},
  journal = {IEEE Trans Med Imaging.},
  title = {Editorial: Special issue on Simulation and Synthesis in Medical Imaging.},
  author = {Frangi, A. F. and Tsaftaris, S. A. and Prince, J. L.},
  programmes = {cp-realworld, cp-twinning},
}

Gooya, A., Lekadir, K., Castro-Mateos, I., Pozo, J. M., and Frangi, A. F. (2018). Mixture of probabilistic principal component analyzers for shapes from point sets. IEEE Trans Pattern Anal Mach Intell., 40(4):891–904. DOI: 10.1109/tpami.2017.2700276.

journals Bib

@article{Gooya2018,
  doi = {10.1109/tpami.2017.2700276},
  pages = {891--904},
  number = {4},
  volume = {40},
  month = apr,
  year = {2018},
  journal = {{IEEE} Trans Pattern Anal Mach Intell.},
  title = {Mixture of probabilistic principal component analyzers for shapes from point sets},
  author = {Gooya, A. and Lekadir, K. and Castro-Mateos, I. and Pozo, J. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Guo, L., Vardakis, J. C., Lassila, T., Mitolo, M., Ravikumar, N., and 9 more authors. (2018). Subject-specific multiporoelastic model for exploring the risk factors associated with the early stages of Alzheimer’s Disease.. Interface Focus., 8(1):e20170019. DOI: 10.1098/rsfs.2017.0019.

journals Bib

@article{Guo2017,
  doi = {10.1098/rsfs.2017.0019},
  pages = {e20170019},
  number = {1},
  volume = {8},
  month = feb,
  year = {2018},
  journal = {Interface Focus.},
  title = {Subject-specific multiporoelastic model for exploring the risk factors associated with the early stages of Alzheimer’s Disease.},
  author = {Guo, L. and Vardakis, J. C. and Lassila, T. and Mitolo, M. and Ravikumar, N. and Chou, D. and Lange, M. and Sarrami-Foroushani, A. and Tully, B. J. and Taylor, Z. A. and Varma, S. and Venneri, A. and Frangi, A. F. and Ventikos, Y.},
  programmes = {cp-realworld, cp-twinning},
}

Huang, Y., Shao, L., and Frangi, A. F. (2018). Cross-Modality Image Synthesis via Weakly-Coupled and Geometry Co-Regularized Joint Dictionary Learning.. IEEE Trans Med Imaging., 37(3):815–827. DOI: 10.1109/tmi.2017.2781192.

journals Bib

@article{Huang2017,
  doi = {10.1109/tmi.2017.2781192},
  pages = {815--827},
  number = {3},
  volume = {37},
  month = mar,
  year = {2018},
  journal = {IEEE Trans Med Imaging.},
  title = {Cross-Modality Image Synthesis via Weakly-Coupled and Geometry Co-Regularized Joint Dictionary Learning.},
  author = {Huang, Y. and Shao, L. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Lassila, T., Di Marco, L. Y., Mitolo, M., Iaia, V., Levedianos, G., and 2 more authors. (2018). Screening for Cognitive Impairment by Model Assisted Cerebral Blood Flow Estimation.. IEEE Trans Biomedical Eng., 65(7):1654–1661. DOI: 10.1109/tbme.2017.2759511.

journals Bib

@article{Lassila2017,
  doi = {10.1109/tbme.2017.2759511},
  pages = {1654--1661},
  number = {7},
  volume = {65},
  year = {2018},
  journal = {IEEE Trans Biomedical Eng.},
  title = {Screening for Cognitive Impairment by Model Assisted Cerebral Blood Flow Estimation.},
  author = {Lassila, T. and {Di Marco}, L. Y. and Mitolo, M. and Iaia, V. and Levedianos, G. and Venneri, A. and Frangi, A. F.},
  programmes = {is-modelling, cp-realworld},
}

Maier-Hein, L., Eisenmann, M., Reinke, A., Onogur, S., Stankovic, M., and 33 more authors. (2018). Why rankings of biomedical image analysis competitions should be interpreted with care?. Nat Commun., 9(1):5217. DOI: 10.1038/s41467-018-07619-7.

journals Bib

@article{Maier-Hein2018a,
  doi = {10.1038/s41467-018-07619-7},
  pages = {5217},
  number = {1},
  volume = {9},
  month = dec,
  year = {2018},
  journal = {Nat Commun.},
  title = {Why rankings of biomedical image analysis competitions should be interpreted with care?},
  author = {Maier-Hein, L. and Eisenmann, M. and Reinke, A. and Onogur, S. and Stankovic, M. and Scholz, P. and Arbel, T. and Bogunovic, H. and Bradley, A. and Carass, A. and Feldmann, C. and Frangi, A. F. and Full, P. and {van Ginneken}, B. and Hanbury, A. and Honauer, K. and Kozubek, M. and Landman, B. and März, K. and Maier, O. and Maier-Hein, K. and Menze, B. and Müller, H. and Neher, P. and Niessen, W. J. and Rajpoot, N. and Sharp, G. and Sirinukunwattana, K. and Speidel, S. and Stock, C. and Stoyanov, D. and {Aziz Taha}, A. and {van der Sommen}, F. and Wang, C.-W. and Weber, M.-A. and Zheng, G. and Jannin, P. and Kopp-Schneider, A.},
  programmes = {cp-realworld, is-trials},
}

Mozumder, M., Beltrachini, L., Collier, Q., Pozo, J. M., and Frangi, A. F. (2018). Simultaneous magnetic resonance diffusion and pseudo-diffusion tensor imaging. Magn Res Med., 79(4):2367–2378. DOI: 10.1002/mrm.26840.

journals Bib

@article{Mozumder2017,
  doi = {10.1002/mrm.26840},
  pages = {2367--2378},
  number = {4},
  volume = {79},
  month = apr,
  year = {2018},
  journal = {Magn Res Med.},
  title = {Simultaneous magnetic resonance diffusion and pseudo-diffusion tensor imaging},
  author = {Mozumder, M. and Beltrachini, L. and Collier, Q. and Pozo, J. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Nemat, H., Fehri, H., Ahmadinejad, N., Frangi, A. F., and Gooya, A. (2018). Classification of Breast Lesions in Ultrasonography Using Sparse Logistic Regression and Morphology-based Texture Features.. Med Phys., 45(9):4112–4124. DOI: 10.1002/mp.13082.

journals Bib

@article{Nemat2018,
  doi = {10.1002/mp.13082},
  pages = {4112--4124},
  number = {9},
  volume = {45},
  year = {2018},
  journal = {Med Phys.},
  title = {Classification of Breast Lesions in Ultrasonography Using Sparse Logistic Regression and Morphology-based Texture Features.},
  author = {Nemat, H. and Fehri, H. and Ahmadinejad, N. and Frangi, A. F. and Gooya, A.},
  programmes = {cp-realworld},
}

Ngoepe, M. N., Frangi, A. F., Byrne, J. V., and Ventikos, Y. (2018). Thrombosis in cerebral aneurysms and the computational modelling thereof: A review.. Front Physiol- Computational Physiology and Medicine., 9:e00306. DOI: 10.3389/fphys.2018.00306.

journals Bib

@article{Ngoepe2018,
  doi = {10.3389/fphys.2018.00306},
  pages = {e00306},
  volume = {9},
  month = apr,
  year = {2018},
  journal = {Front Physiol- Computational Physiology and Medicine.},
  title = {Thrombosis in cerebral aneurysms and the computational modelling thereof: A review.},
  author = {Ngoepe, M. N. and Frangi, A. F. and Byrne, J. V. and Ventikos, Y.},
  programmes = {is-modelling},
}

Suinesiaputra, A., Ablin, P., Alba, X., Alessandrini, M., Allen, J., and 31 more authors. (2018). Statistical shape modeling of the left ventricle: myocardial infarct classification challenge.. IEEE J Biomed Health Inform., 22(2):503–515. DOI: 10.1109/jbhi.2017.2652449.

journals Bib

@article{Suinesiaputra2018,
  doi = {10.1109/jbhi.2017.2652449},
  pages = {503--515},
  number = {2},
  volume = {22},
  month = feb,
  year = {2018},
  journal = {IEEE J Biomed Health Inform.},
  title = {Statistical shape modeling of the left ventricle: myocardial infarct classification challenge.},
  author = {Suinesiaputra, A. and Ablin, P. and Alba, X. and Alessandrini, M. and Allen, J. and Bai, W. and Cimen, S. and Claes, P. and Cowan, B. R. and D'hooge, J. and Duchateau, N. and Ehrhardt, J. and Frangi, A. F. and Gooya, A. and Grau, V. and Lekadir, K. and Lu, A. and Mukhopadhyay, A. and Oksuz, I. and Parajali, N. and Pennec, X. and Pereanez, M. and Pinto, C. and Piras, P. and Rohe, M.-M. and Rueckert, D. and Saring, D. and Sermesant, M. and Siddiqi, K. and Tabassian, M. and Teresi, L. and Tsaftaris, S. A. and Wilms, M. and Young, A. A. and Zhang, X. and Medrano-Gracia, P.},
  programmes = {cp-realworld},
}

Vukicevic, A., Çimen, S., Jagic, N., Jovicic, G., Frangi, A. F., and 1 more author. (2018). Reconstruction and structured meshing of coronary arteries from X-ray angiography.. Sci Reports., 8(1):1711ff.

journals Bib

@article{Vukicevic2017,
  pages = {1711ff},
  number = {1},
  volume = {8},
  month = jan,
  year = {2018},
  journal = {Sci Reports.},
  title = {Reconstruction and structured meshing of coronary arteries from {X}-ray angiography.},
  author = {Vukicevic, A. and Çimen, S. and Jagic, N. and Jovicic, G. and Frangi, A. F. and Filipovic, N.},
  programmes = {cp-realworld},
}

Frangi, A. F., Schnabel, J. A., Davatzikos, C., López-Alberola, C., and Fichtinger, G. (Eds.). (2018). Medical Image Computing and Computer-Assisted Intervention (MICCAI): Proceedings of the International Conference MICCAI 2018 – Part I: Image Quality and Artefacts; Image Reconstruction Methods; Machine Learning in Medical Imaging; Statistical Analysis for Medical Imaging; Image Registration Methods. Berlin: Springer-Verlag.

ISBN: 978-3-030-00927-4. Series: Lecture Notes in Computer Science. Volume: 11070.

books Bib

@book{Book_Frangi2018a,
  subtitle = {Proceedings of the International Conference {MICCAI} 2018 -- Part I:  Image Quality and Artefacts; Image Reconstruction Methods; Machine Learning in Medical Imaging; Statistical Analysis for Medical Imaging; Image Registration Methods},
  editor = {Frangi, A. F. and Schnabel, J. A. and Davatzikos, C. and L\'{o}pez-Alberola, C. and Fichtinger, G.},
  isbn = {978-3-030-00927-4},
  volume = {11070},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2018},
  title = {Medical Image Computing and Computer-Assisted Intervention ({MICCAI})},
  programmes = {cp-realworld},
}

Frangi, A. F., Schnabel, J. A., Davatzikos, C., López-Alberola, C., and Fichtinger, G. (Eds.). (2018). Medical Image Computing and Computer-Assisted Intervention (MICCAI): Proceedings of the International Conference MICCAI 2018 – Part II: Optical and Histology Applications: Optical Imaging Applications; Histology Applications; Microscopy Applications; Optical Coherence Tomography and Other Optical Imaging Applications. Cardiac, Chest and Abdominal Applications: Cardiac Imaging Applications: Colorectal, Kidney and Liver Imaging Applications; Lung Imaging Applications; Breast Imaging Applications; Other Abdominal Applications. Berlin: Springer-Verlag.

ISBN: 978-3-030-00933-5. Series: Lecture Notes in Computer Science. Volume: 11071.

books Bib

@book{Book_Frangi2018b,
  subtitle = {Proceedings of the International Conference {MICCAI} 2018 -- Part II:  Optical and Histology Applications: Optical Imaging Applications; Histology Applications; Microscopy Applications; Optical Coherence Tomography and Other Optical Imaging Applications. Cardiac, Chest and Abdominal Applications: Cardiac Imaging Applications: Colorectal, Kidney and Liver Imaging Applications; Lung Imaging Applications; Breast Imaging Applications; Other Abdominal Applications},
  editor = {Frangi, A. F. and Schnabel, J. A. and Davatzikos, C. and L\'{o}pez-Alberola, C. and Fichtinger, G.},
  isbn = {978-3-030-00933-5},
  volume = {11071},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2018},
  title = {Medical Image Computing and Computer-Assisted Intervention ({MICCAI})},
  programmes = {cp-realworld},
}

Frangi, A. F., Schnabel, J. A., Davatzikos, C., López-Alberola, C., and Fichtinger, G. (Eds.). (2018). Medical Image Computing and Computer-Assisted Intervention (MICCAI): Proceedings of the International Conference MICCAI 2018 – Part III: Diffusion Tensor Imaging and Functional MRI: Diffusion Tensor Imaging; Diffusion Weighted Imaging; Functional MRI; Human Connectome. Neuroimaging and Brain Segmentation Methods: Neuroimaging; Brain Segmentation Methods.

Series: Lecture Notes in Computer Science.

books Bib

@book{Book_Frangi2018c,
  subtitle = {Proceedings of the International Conference {MICCAI} 2018 -- Part III:  Diffusion Tensor Imaging and Functional MRI: Diffusion Tensor Imaging; Diffusion Weighted Imaging; Functional MRI; Human Connectome. Neuroimaging and Brain Segmentation Methods: Neuroimaging; Brain Segmentation Methods},
  editor = {Frangi, A. F. and Schnabel, J. A. and Davatzikos, C. and L\'{o}pez-Alberola, C. and Fichtinger, G.},
  series = {Lecture Notes in Computer Science},
  year = {2018},
  title = {Medical Image Computing and Computer-Assisted Intervention ({MICCAI})},
  programmes = {cp-realworld},
}

Glocker, B., Yao, J., Vrtovec, T., Frangi, A. F., and Zheng, G. (Eds.). (2018). Computational Methods and Clinical Applications in Musculoskeletal Imaging: Proceedings of the International Workshop and Challenge on Computational Musculoskeletal Imaging (MSKI2017). Berlin: Springer-Verlag.

ISBN: 978-3-319-74112-3. Series: Lecture Notes in Computer Science. Volume: 10734.

books Bib

@book{Book_Glocker2018,
  subtitle = {Proceedings of the International Workshop and Challenge on Computational Musculoskeletal Imaging ({MSKI}2017)},
  editor = {Glocker, B. and Yao, J. and Vrtovec, T. and Frangi, A. F. and Zheng, G.},
  isbn = {978-3-319-74112-3},
  volume = {10734},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2018},
  title = {Computational Methods and Clinical Applications in Musculoskeletal Imaging},
  programmes = {cp-realworld},
}

Farzi, M. (2018). Bone Ageing and Osteoporosis: Automated DXA Image Analysis for Population Imaging. PhD Thesis, University of Sheffield. Supervised by Wilkinson, J. M., and Frangi, A. F.

theses
Manap, R. A. (2018). New learning frameworks for blind image quality assessment model. PhD Thesis, University of Sheffield. Supervised by Frangi, A. F., and Shao, L.

theses
Sarrami-Foroushani, A. (2018). In silico clinical trials for assessment of intracranial flow diverters. PhD Thesis, University of Sheffield. Supervised by Frangi, A. F., and Lassila, T.

theses

2017

De Marco, M., Beltrachini, L., Biancardi, A., Frangi, A. F., and Venneri, A. (2017). Machine learning support to individual diagnosis of mild cognitive impairment using multimodal MRI and cognitive assessments. Alzheimer Dis Assoc Disord., 31(4):278–286. DOI: 10.1097/wad.0000000000000208.

journals Bib

@article{DeMarco2017a,
  doi = {10.1097/wad.0000000000000208},
  pages = {278--286},
  number = {4},
  volume = {31},
  month = oct,
  year = {2017},
  journal = {Alzheimer Dis Assoc Disord.},
  author = {{De Marco}, M. and Beltrachini, L. and Biancardi, A. and Frangi, A. F. and Venneri, A.},
  programmes = {cp-realworld},
}

De Marco, M., Vallelunga, A., Meneghello, F., Varma, S., Frangi, A. F., and 1 more author. (2017). ApoE ε4 Allele Related Alterations in Hippocampal Connectivity in Early Alzheimer’s Disease Support Memory Performance. Curr Alzheimer Res, 14(7):766–77. DOI: 10.2174/1567205014666170206113528.

journals Bib

@article{DeMarco2017b,
  doi = {10.2174/1567205014666170206113528},
  pages = {766--77},
  number = {7},
  volume = {14},
  year = {2017},
  journal = {Curr Alzheimer Res},
  title = {ApoE ε4 Allele Related Alterations in Hippocampal Connectivity in Early Alzheimer’s Disease Support Memory Performance},
  author = {{De Marco}, M. and Vallelunga, A. and Meneghello, F. and Varma, S. and Frangi, A. F. and Venneri, A.},
  programmes = {cp-realworld},
}

Elhami, M., Alemi, N., Frangi, A. F., and Gooya, A. (2017). Tracking and Diameter Estimation of Retinal Vessels Using Gaussian Process and Radon Transform.. J Med Imaging., 4(3):e034006.

journals Bib

@article{Elhami2017,
  pages = {e034006},
  number = {3},
  volume = {4},
  month = jul,
  year = {2017},
  journal = {J Med Imaging.},
  title = {Tracking and Diameter Estimation of Retinal Vessels Using Gaussian Process and Radon Transform.},
  author = {Elhami, M. and Alemi, N. and Frangi, A. F. and Gooya, A.},
  programmes = {cp-realworld},
}

Evju, Ø., Pozo, J. M., Frangi, A. F., and Mardal, K.-A. (2017). Robustness of common hemodynamic indicators with respect to numerical resolution in 38 middle cerebral artery aneurysms. PLoS One, 12(6):e0177566. DOI: 10.1371/journal.pone.0177566.

journals Bib

@article{Evju2017,
  doi = {10.1371/journal.pone.0177566},
  pages = {e0177566},
  number = {6},
  volume = {12},
  month = jun,
  year = {2017},
  journal = {PLoS One},
  title = {Robustness of common hemodynamic indicators with respect to numerical resolution in 38 middle cerebral artery aneurysms},
  author = {Evju, Ø. and Pozo, J. M. and Frangi, A. F. and Mardal, K.-A.},
  programmes = {is-modelling, is-trials},
}

Farzi, M., Morris, R. M., Penny, J., Yang, L., Pozo, J. M., and 3 more authors. (2017). Quantitating the effect of prosthesis design on femoral remodeling using high-resolution region-free densitometric analysis (DXA-RFA). J Orthop Res., 35(10):2203–2210. DOI: 10.1002/jor.23536.

journals Bib

@article{Farzi2017,
  doi = {10.1002/jor.23536},
  pages = {2203--2210},
  number = {10},
  volume = {35},
  month = oct,
  year = {2017},
  journal = {J Orthop Res.},
  title = {Quantitating the effect of prosthesis design on femoral remodeling using high-resolution region-free densitometric analysis ({DXA-RFA})},
  author = {Farzi, M. and Morris, R. M. and Penny, J. and Yang, L. and Pozo, J. M. and Overgaard, S. and Frangi, A. F. and Wilkinson, J. M.},
  programmes = {cp-realworld},
}

Fu, H., Xu, Y., Lin, S., Zhang, X., Wong, D. W. K., and 4 more authors. (2017). Segmentation and Quantification for Angle-Closure Glaucoma Assessment in Anterior Segment OCT. IEEE Trans Med Imaging., 36(9):1930–1938. DOI: 10.1109/tmi.2017.2703147.

journals Bib

@article{Fu2017,
  doi = {10.1109/tmi.2017.2703147},
  pages = {1930--1938},
  number = {9},
  volume = {36},
  month = sep,
  year = {2017},
  journal = {IEEE Trans Med Imaging.},
  title = {Segmentation and Quantification for Angle-Closure Glaucoma Assessment in Anterior Segment {OCT}},
  author = {Fu, H. and Xu, Y. and Lin, S. and Zhang, X. and Wong, D. W. K. and Liu, J. and Frangi, A. F. and Baskaran, M. and Aung, T.},
  programmes = {cp-realworld},
}

Geers, A. J., Morales, H. G., Larrabide, I., Butakoff, C., Bijlenga, P., and 1 more author. (2017). Wall shear stress at the initiation site of cerebral aneurysms. Biomech Model Mechanobiol, 16. DOI: 10.1007/s10237-016-0804-3.

journals Bib

@article{Geers2017,
  doi = {10.1007/s10237-016-0804-3},
  issn = {1617-7959},
  volume = {16},
  year = {2017},
  journal = {Biomech Model Mechanobiol},
  title = {Wall shear stress at the initiation site of cerebral aneurysms},
  author = {Geers, A. J. and Morales, H. G. and Larrabide, I. and Butakoff, C. and Bijlenga, P. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Hoogendoorn, C., Sebastian, R., Rodriguez, J. F., Lekadir, K., and Frangi, A. F. (2017). An atlas- and data-driven approach to initializing reaction-diffusion systems in computer cardiac electrophysiology.. Int J Numer Method Biomed Eng., 33(8):e2846. DOI: 10.1002/cnm.2846.

journals Bib

@article{Hoogendoorn2017,
  doi = {10.1002/cnm.2846},
  pages = {e2846},
  number = {8},
  volume = {33},
  month = aug,
  year = {2017},
  journal = {Int J Numer Method Biomed Eng.},
  title = {An atlas- and data-driven approach to initializing reaction-diffusion systems in computer cardiac electrophysiology.},
  author = {Hoogendoorn, C. and Sebastian, R. and Rodriguez, J. F. and Lekadir, K. and Frangi, A. F.},
  programmes = {is-modelling},
}

Hua, R., Pozo, J. M., Taylor, Z. A., and Frangi, A. F. (2017). Multiresolution eXtended Free-Form Deformations (XFFD) for non-rigid registration with discontinuous transforms.. Med Image Anal, 36:113–122. DOI: 10.1016/j.media.2016.10.008.

journals Bib

@article{Hua2017,
  doi = {10.1016/j.media.2016.10.008},
  pages = {113--122},
  volume = {36},
  year = {2017},
  journal = {Med Image Anal},
  title = {Multiresolution eXtended Free-Form Deformations ({X{FFD}}) for non-rigid registration with discontinuous transforms.},
  author = {Hua, R. and Pozo, J. M. and Taylor, Z. A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Kasztelnik, M., Coto, E., Bubak, M., Malawski, M., Nowakowski, P., and 4 more authors. (2017). Support for Taverna workflows in the VPH-Share cloud platform. Comput Methods Programs Biomed, 146:37–46. DOI: 10.1016/j.cmpb.2017.05.006.

journals Bib

@article{Kasztelnik2017,
  doi = {10.1016/j.cmpb.2017.05.006},
  pages = {37--46},
  volume = {146},
  year = {2017},
  journal = {Comput Methods Programs Biomed},
  title = {{Support for {Taverna} workflows in the {VPH-Share} cloud platform}},
  author = {Kasztelnik, M. and Coto, E. and Bubak, M. and Malawski, M. and Nowakowski, P. and Arenas, J. and Saglimbeni, A. and Testi, D. and Frangi, A. F.},
  programmes = {cp-twinning, is-ecosystems},
}

Lange, M., Palamara, S., Lassila, T., Vergara, C., Quarteroni, A., and 1 more author. (2017). Improved hybrid/GPU algorithm for solving cardiac electrophysiology problems on Purkinje networks.. Int J Numer Method Biomed Eng., 33(6):e2835. DOI: 10.1002/cnm.2835.

journals Bib

@article{Lange2017,
  doi = {10.1002/cnm.2835},
  pages = {e2835},
  number = {6},
  volume = {33},
  month = jun,
  year = {2017},
  journal = {Int J Numer Method Biomed Eng.},
  title = {Improved hybrid/{GPU} algorithm for solving cardiac electrophysiology problems on {P}urkinje networks.},
  author = {Lange, M. and Palamara, S. and Lassila, T. and Vergara, C. and Quarteroni, A. and Frangi, A. F.},
  programmes = {is-modelling},
}

Manap, R. A., Shao, L., and Frangi, A. F. (2017). PATCH-IQ: A patch based learning framework for blind image quality assessment.. Inform Sciences., 420:329–344. DOI: 10.1016/j.ins.2017.08.080.

journals Bib

@article{Manap2017,
  doi = {10.1016/j.ins.2017.08.080},
  pages = {329--344},
  volume = {420},
  month = dec,
  year = {2017},
  journal = {Inform Sciences.},
  title = {{PATCH-IQ}: A patch based learning framework for blind image quality assessment.},
  author = {Manap, R. A. and Shao, L. and Frangi, A. F.},
  programmes = {cp-realworld},
}

McGrath, D. M., Ravikumar, N., Beltrachini, L., Wilkinson, I. D., Frangi, A. F., and 1 more author. (2017). Evaluation of wave delivery methodology for brain MRE: insights from computational simulations. Magn Reson Med, 78(1):341–356. DOI: 10.1002/mrm.26333.

journals Bib

@article{McGrath2017,
  doi = {10.1002/mrm.26333},
  pages = {341--356},
  number = {1},
  volume = {78},
  month = jul,
  year = {2017},
  journal = {Magn Reson Med},
  title = {Evaluation of wave delivery methodology for brain {MRE}: insights from computational simulations},
  author = {McGrath, D. M. and Ravikumar, N. and Beltrachini, L. and Wilkinson, I. D. and Frangi, A. F. and Taylor, Z. A.},
  programmes = {cp-realworld, cp-twinning},
}

Parker, A., Yang, L., Farzi, M., Pozo, J. M., Frangi, A. F., and 1 more author. (2017). Quantifying Pelvic Periprosthetic Bone Remodeling Using Dual-Energy X-Ray Absorptiometry Region-Free Analysis. J Clin Densitom., 20(4):480–485. DOI: 10.1016/j.jocd.2017.05.013.

journals Bib

@article{Parker2017,
  doi = {10.1016/j.jocd.2017.05.013},
  issn = {1094-6950},
  pages = {480--485},
  number = {4},
  volume = {20},
  year = {2017},
  journal = {J Clin Densitom.},
  title = {Quantifying Pelvic Periprosthetic Bone Remodeling Using Dual-Energy {X}-Ray Absorptiometry {R}egion-{F}ree {A}nalysis},
  author = {Parker, A. and Yang, L. and Farzi, M. and Pozo, J. M. and Frangi, A. F. and Wilkinson, M. J.},
  programmes = {cp-realworld},
}

Parto Dezfouli, M. A., Parto Dezfouli, M., Ahmadian, A., Frangi, A. F., Esmaeili Rad, M., and 1 more author. (2017). Quantification of 1 H-MRS signals based on sparse metabolite profiles in the time-frequency domain.. NMR Biomed., 30(2):e3675. DOI: 10.1002/nbm.3675.

Keyword: MRS, continuous wavelet transformation (CWT), quantification, sparse representation.

journals Bib

@article{PartoDezfouli2017,
  linking-issn = {0952-3480},
  keyword = {MRS, continuous wavelet transformation (CWT), quantification, sparse representation},
  electronic-issn = {1099-1492},
  pages = {e3675},
  number = {2},
  volume = {30},
  month = feb,
  year = {2017},
  journal = {NMR Biomed.},
  title = {Quantification of 1 {H}-{MRS} signals based on sparse metabolite profiles in the time-frequency domain.},
  author = {Parto Dezfouli, M. A. and Parto Dezfouli, M. and Ahmadian, A. and Frangi, A. F. and Esmaeili Rad, M. and Saligheh Rad, H.},
  doi = {10.1002/nbm.3675},
  programmes = {cp-realworld},
}

Pozo, J. M., Geers, A. J., Villa-Uriol, M. C., and Frangi, A. F. (2017). Interlacing Complexity Index for open flow systems based on mutual information. J Fluid Mech., 825:704–742.

journals Bib

@article{Pozo2017,
  pages = {704--742},
  volume = {825},
  month = aug,
  year = {2017},
  journal = {J Fluid Mech.},
  title = {Interlacing Complexity Index for open flow systems based on mutual information},
  author = {Pozo, J. M. and Geers, A. J. and Villa-Uriol, M. C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Ravikumar, N., Gooya, A., Çimen, S., Frangi, A. F., and Taylor, Z. A. (2017). Group-wise similarity registration of point sets using Student’s t-mixture model for statistical shape models.. Med Image Anal.(42):156–176. DOI: 10.1016/j.media.2017.11.012.

journals Bib

@article{Ravikumar2017,
  doi = {10.1016/j.media.2017.11.012},
  pages = {156--176},
  number = {42},
  month = dec,
  year = {2017},
  journal = {Med Image Anal.},
  title = {Group-wise similarity registration of point sets using Student's t-mixture model for statistical shape models.},
  author = {Ravikumar, N. and Gooya, A. and Çimen, S. and Frangi, A. F. and Taylor, Z. A.},
  programmes = {cp-realworld},
}

Sarrami-Foroushani, A., Lassila, T., and Frangi, A. F. (2017). Virtual endovascular treatment of intracranial aneurysms: models and uncertainty.. Wiley Interdiscip Rev Syst Biol Med, 9(4):e1385.

journals Bib

@article{Sarrami-Foroushani2017,
  pages = {e1385},
  number = {4},
  volume = {9},
  month = jul,
  year = {2017},
  journal = {Wiley Interdiscip Rev Syst Biol Med},
  title = {Virtual endovascular treatment of intracranial aneurysms: models and uncertainty.},
  author = {Sarrami-Foroushani, A. and Lassila, T. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Shaukat, F., Raja, G., Gooya, A., and Frangi, A. F. (2017). Fully automatic and accurate detection of lung nodules in CT images using a hybrid feature set.. Med Phys, 44(7):3615–3629. DOI: 10.1002/mp.12273.

journals Bib

@article{Shaukat2017,
  doi = {10.1002/mp.12273},
  pages = {3615--3629},
  number = {7},
  volume = {44},
  month = jul,
  year = {2017},
  journal = {Med Phys},
  title = {Fully automatic and accurate detection of lung nodules in {CT} images using a hybrid feature set.},
  author = {Shaukat, F. and Raja, G. and Gooya, A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Liu, C.-L., Lee, S.-W., Yang, J.-Y., Yang, J., Makihara, Y., and 2 more authors. (Eds.). (2017). Proceedings The 4th Asian Conference on Pattern Recognition (ACPR2017). Piscataway, NJ: IEEE Computer Society.

ISBN: 978-1-5386-3354-0.

books Bib

@book{Book_Liu2017,
  editor = {Liu, C.-L. and Lee, S.-W. and Yang, J.-Y. and Yang, J. and Makihara, Y. and Tao, D.-C. and Frangi, A. F.},
  isbn = {978-1-5386-3354-0},
  publisher = {IEEE Computer Society},
  location = {Piscataway, NJ},
  year = {2017},
  title = {Proceedings The 4th Asian Conference on Pattern Recognition (ACPR2017)},
  programmes = {cp-realworld},
}

Tsaftaris, S. A., Gooya, A., Frangi, A. F., and Prince, J. L. (Eds.). (2017). Simulation and Synthesis in Medical Imaging: Proceedings of the International Workshop SASHIMI 2017. Berlin: Springer-Verlag.

ISBN: 978-3-319-68126-9. Series: Lecture Notes in Computer Science. Volume: 10557.

books Bib

@book{Book_Tsaftaris2017,
  doi = {10.1109/tmi.2018.2800298},
  subtitle = {Proceedings of the International Workshop {SASHIMI} 2017},
  editor = {Tsaftaris, S. A. and Gooya, A. and Frangi, A. F. and Prince, J. L.},
  isbn = {978-3-319-68126-9},
  volume = {10557},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2017},
  title = {Simulation and Synthesis in Medical Imaging},
  programmes = {cp-realworld, cp-twinning},
}

Yao, J., Vrtovec, T., Glocker, B., Zheng, G., Frangi, A. F., and 1 more author. (Eds.). (2017). Computational Methods and Clinical Applications for Spine Imaging: Proceedings of the International Workshop and Challenge on Computational Spine Imaging (CSI2016). Berlin: Springer-Verlag.

ISBN: 978-3-319-55049-7. Series: Lecture Notes in Computer Science. Volume: 10182.

books Bib

@book{Book_Yao2017,
  subtitle = {Proceedings of the International Workshop and Challenge on Computational Spine Imaging ({CSI}2016)},
  editor = {Yao, J. and Vrtovec, T. and Glocker, B. and Zheng, G. and Frangi, A. F. and Shuo, L.},
  isbn = {978-3-319-55049-7},
  volume = {10182},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2017},
  title = {Computational Methods and Clinical Applications for Spine Imaging},
  programmes = {cp-realworld},
}

Lange, M. (2017). Exploration of the Human Purkinje Network in Virtual Populations. PhD Thesis, University of Sheffield. Supervised by Frangi, A. F., and Lassila, T.

theses
Hua, R. (2017). Non-rigid Medical Image Registration with Extended Free Form Deformations: Modelling General Tissue Transitions. PhD Thesis, University of Sheffield. Supervised by Frangi, A. F., and Pozo, J. M.

theses
Alba, X. (2017). Automated Cardiac MR Image Analysis for Population Imaging. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and Lekadir, K.

theses
Cimen, S. (2017). Reconstruction of Coronary Arteries from X-ray Rotational Angiography. PhD Thesis, University of Sheffield. Supervised by Frangi, A. F., and Gooya, A.

theses
Ravikumar, N. (2017). A Probabilistic Framework for Statistical Shape Models and Atlas Construction: Application to Neuroimaging. PhD Thesis, University of Sheffield. Supervised by Taylor, Z. A., and Frangi, A. F.

theses
Dong, B. (2017). High-throughput Image Analysis of Zebrafish Model of Parkinson’s Disease. PhD Thesis, University of Sheffield. Supervised by Frangi, A. F.

theses
Pereanez, M. (2017). Enlargement, Subdivision and Individualization of Statistical Shape Models: Application to 3D Medical Image Segmentation. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and Lekadir, K.

theses

2016

Alba, X., Pereanez, M., Hoogendoorn, C., Swift, A. J., Wild, J. M., and 2 more authors. (2016). An algorithm for the segmentation of highly abnormal hearts using a generic statistical shape model. IEEE Trans Med Imaging, 35(3):845–859. DOI: 10.1109/tmi.2015.2497906.

journals Bib

@article{Alba2016,
  doi = {10.1109/tmi.2015.2497906},
  pages = {845--859},
  number = {3},
  volume = {35},
  year = {2016},
  journal = {{IEEE} Trans Med Imaging},
  title = {An algorithm for the segmentation of highly abnormal hearts using a generic statistical shape model},
  author = {Alba, X. and Pereanez, M. and Hoogendoorn, C. and Swift, A. J. and Wild, J. M. and Frangi, A. F. and Lekadir, K.},
  programmes = {cp-realworld},
}

Avegliano, G. P., Costabel, J. P., Asch, F. M., Sciancalepore, A., Kuschnir, P., and 4 more authors. (2016). Utility of real time 3D echocardiography for the assessment of left ventricular mass in patients with hypertrophic cardiomyopathy: comparison with cardiac magnetic resonance. Echocardiogr –J Card, 33(3):431–436. DOI: 10.1111/echo.13096.

journals Bib

@article{Avegliano2016,
  doi = {10.1111/echo.13096},
  pages = {431--436},
  number = {3},
  volume = {33},
  year = {2016},
  journal = {Echocardiogr --J Card},
  title = {Utility of real time {{3D}} echocardiography for the assessment of left ventricular mass in patients with hypertrophic cardiomyopathy: comparison with cardiac magnetic resonance},
  author = {Avegliano, G. P. and Costabel, J. P. and Asch, F. M. and Sciancalepore, A. and Kuschnir, P. and Huguet, M. and Tobon-Gomez, C. and Frangi, A. F. and Ronderos, R.},
  programmes = {cp-realworld},
}

Butakoff, C., Balocco, S., Sukno, F. M., Hoogendoorn, C., Tobon-Gomez, C., and 2 more authors. (2016). Left-ventricular epi- and endocardium extraction from 3D ultrasound images using an automatically constructed 3D ASM. Comput Methods Biomech Biomed Eng Imaging Vis, 4(5):265–280.

journals Bib

@article{Butakoff2016,
  pages = {265--280},
  number = {5},
  volume = {4},
  year = {2016},
  journal = {Comput Methods Biomech Biomed Eng Imaging Vis},
  title = {Left-ventricular epi- and endocardium extraction from {{3D}} ultrasound images using an automatically constructed {{3D}} ASM},
  author = {Butakoff, C. and Balocco, S. and Sukno, F. M. and Hoogendoorn, C. and Tobon-Gomez, C. and Avegliano, G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Castro-Mateos, I., Hua, R., Pozo, J. M., Lazary, A., and Frangi, A. F. (2016). Intervertebral disc classification by its degree of degeneration from T2-weighted magnetic resonance images. Eur Spine J, 25(9):2721–2727. DOI: 10.1007/s00586-016-4654-6.

journals Bib

@article{Castro-Mateos2016,
  doi = {10.1007/s00586-016-4654-6},
  pages = {2721--2727},
  number = {9},
  volume = {25},
  year = {2016},
  journal = {Eur Spine J},
  title = {Intervertebral disc classification by its degree of degeneration from T2-weighted magnetic resonance images},
  author = {Castro-Mateos, I. and Hua, R. and Pozo, J. M. and Lazary, A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Çimen, S., Gooya, A., Grass, M., and Frangi, A. F. (2016). Reconstruction of coronary arteries from x-ray angiography: a review. Med Image Anal, 32:46–68. DOI: 10.1016/j.media.2016.02.007.

journals Bib

@article{Cimen2016,
  doi = {10.1016/j.media.2016.02.007},
  pages = {46--68},
  volume = {32},
  month = aug,
  year = {2016},
  journal = {Med Image Anal},
  title = {Reconstruction of coronary arteries from x-ray angiography: a review},
  author = {\c{C}imen, S. and Gooya, A. and Grass, M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Frangi, A. F., Taylor, Z. A., and Gooya, A. (2016). Precision imaging: more descriptive, predictive and integrative imaging. Med Image Anal, 33:27–32. DOI: 10.1016/j.media.2016.06.024.

journals Bib

@article{Frangi2016,
  doi = {10.1016/j.media.2016.06.024},
  pages = {27--32},
  volume = {33},
  year = {2016},
  journal = {Med Image Anal},
  title = {Precision imaging: more descriptive, predictive and integrative imaging},
  author = {Frangi, A. F. and Taylor, Z. A. and Gooya, A.},
  programmes = {cp-realworld},
}

Karim, R., Bhagirath, P., Claus, P., James Housden, R., Chen, Z., and 14 more authors. (2016). Evaluation of state-of-the-art segmentation algorithms for left ventricle infarct from late gadolinium enhancement MR images. Med Image Anal, 30:95–107. DOI: 10.1016/j.media.2016.01.004.

journals Bib

@article{Karim2016,
  doi = {10.1016/j.media.2016.01.004},
  pages = {95--107},
  volume = {30},
  year = {2016},
  journal = {Med Image Anal},
  title = {Evaluation of state-of-the-art segmentation algorithms for left ventricle infarct from late gadolinium enhancement {MR} images},
  author = {Karim, R. and Bhagirath, P. and Claus, P. and James Housden, R. and Chen, Z. and Karimaghaloo, Z. and Sohn, H. M. and Lara Rodr\'{\i}guez, L. and Vera, S. and Alb\`{a}, X. and Hennemuth, A. and Peitgen, H. O. and Arbel, T. and Gonz\`{a}lez Ballester, M. A. and Frangi, A. F. and G\"{o}tte, M. and Razavi, R. and Schaeffter, T. and Rhode, K.},
  programmes = {cp-realworld},
}

Lange, M., Di Marco, L. Y., Lekadir, K., Lassila, T., and Frangi, A. F. (2016). Protective role of false tendon in subjects with left bundle branch block: a virtual population study. PLoS One, 11(1):e0146477. DOI: 10.1371/journal.pone.0146477.

journals Bib

@article{Lange2016,
  doi = {10.1371/journal.pone.0146477},
  pages = {e0146477},
  number = {1},
  volume = {11},
  year = {2016},
  journal = {PLoS One},
  title = {Protective role of false tendon in subjects with left bundle branch block: a virtual population study},
  author = {Lange, M. and Di Marco, L. Y. and Lekadir, K. and Lassila, T. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Lekadir, K., Noble, C., Hazrati-Marangalou, J., Hoogendoorn, C., Rietbergen, B., and 2 more authors. (2016). Patient-specific biomechanical modeling of bone strength using statistically-derived fabric tensors. Ann Biomed Eng, 44(1):234–246. DOI: 10.1007/s10439-015-1432-2.

journals Bib

@article{Lekadir2016,
  doi = {10.1007/s10439-015-1432-2},
  pages = {234--246},
  number = {1},
  volume = {44},
  year = {2016},
  journal = {Ann Biomed Eng},
  title = {Patient-specific biomechanical modeling of bone strength using statistically-derived fabric tensors},
  author = {Lekadir, K. and Noble, C. and Hazrati-Marangalou, J. and Hoogendoorn, C. and van Rietbergen, B. and Taylor, Z. A. and Frangi, A. F.},
  programmes = {is-modelling},
}

Lekadir, K., Lange, M., Zimmer, V. A., Hoogendoorn, C., and Frangi, A. F. (2016). Statistically-driven 3D fiber reconstruction and denoising from multi-slice cardiac DTI using a Markov random field model. Med Image Anal, 27:105–116. DOI: 10.1016/j.media.2015.03.006.

journals Bib

@article{Lekadir2016a,
  doi = {10.1016/j.media.2015.03.006},
  pages = {105--116},
  volume = {27},
  year = {2016},
  journal = {Med Image Anal},
  title = {Statistically-driven {{3D}} fiber reconstruction and denoising from multi-slice cardiac {DTI} using a {Markov} random field model},
  author = {Lekadir, K. and Lange, M. and Zimmer, V. A. and Hoogendoorn, C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Lekadir, K., Hoogendoorn, C., Armitage, P., Whitby, E., King, D., and 2 more authors. (2016). Estimation of trabecular bone parameters in children from multisequence MRI using texture-based regression. Med Phys, 43(6):3071. DOI: 10.1118/1.4950713.

journals Bib

@article{Lekadir2016b,
  doi = {10.1118/1.4950713},
  pages = {3071},
  number = {6},
  volume = {43},
  year = {2016},
  journal = {Med Phys},
  title = {Estimation of trabecular bone parameters in children from multisequence {MRI} using texture-based regression},
  author = {Lekadir, K. and Hoogendoorn, C. and Armitage, P. and Whitby, E. and King, D. and Dimitri, P. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Manap, R., Shao, L., and Frangi, A. F. (2016). Non-parametric quality assessment of natural images. IEEE Multimedia, 23(4):22–30. DOI: 10.1109/mmul.2016.2.

journals Bib

@article{Manap2016,
  doi = {10.1109/mmul.2016.2},
  pages = {22--30},
  number = {4},
  volume = {23},
  year = {2016},
  journal = {{IEEE} Multimedia},
  title = {Non-parametric quality assessment of natural images},
  author = {Manap, R. and Shao, L. and Frangi, A. F.},
  programmes = {cp-realworld},
}

McGrath, D. M., Ravikumar, N., Wilkinson, I. D., Frangi, A. F., and Taylor, Z. A. (2016). Magnetic resonance elastography of the brain: an in silico study to determine the influence of cranial anatomy. Magn Reson Med, 76(2):645–62. DOI: 10.1002/mrm.25881.

journals Bib

@article{McGrath2016,
  doi = {10.1002/mrm.25881},
  pages = {645--62},
  number = {2},
  volume = {76},
  year = {2016},
  journal = {Magn Reson Med},
  title = {Magnetic resonance elastography of the brain: an in silico study to determine the influence of cranial anatomy},
  author = {McGrath, D. M. and Ravikumar, N. and Wilkinson, I. D. and Frangi, A. F. and Taylor, Z. A.},
  programmes = {cp-realworld, cp-twinning},
}

Peng, P., Lekadir, K., Gooya, A., Shao, L., Petersen, S. E., and 1 more author. (2016). A review of heart chamber segmentation for structural and functional analysis using cardiac magnetic resonance imaging. MAGMA, 29(2):155–195. DOI: 10.1007/s10334-015-0521-4.

journals Bib

@article{Peng2016,
  doi = {10.1007/s10334-015-0521-4},
  pages = {155--195},
  number = {2},
  volume = {29},
  year = {2016},
  journal = {MAGMA},
  title = {A review of heart chamber segmentation for structural and functional analysis using cardiac magnetic resonance imaging},
  author = {Peng, P. and Lekadir, K. and Gooya, A. and Shao, L. and Petersen, S. E. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Porras, A. R., Alessandrini, M., Mirea, O., D’hooge, J., Frangi, A. F., and 1 more author. (2016). Integration of multi-plane tissue Doppler and b-mode echocardiographic images for left ventricular motion estimation. IEEE Trans Med Imaging, 35(1):89–97. DOI: 10.1109/tmi.2015.2456631.

journals Bib

@article{Porras2016,
  doi = {10.1109/tmi.2015.2456631},
  pages = {89--97},
  number = {1},
  volume = {35},
  year = {2016},
  journal = {{IEEE} Trans Med Imaging},
  title = {Integration of multi-plane tissue {Doppler} and b-mode echocardiographic images for left ventricular motion estimation},
  author = {Porras, A. R. and Alessandrini, M. and Mirea, O. and D'hooge, J. and Frangi, A. F. and Piella, G.},
  programmes = {cp-realworld},
}

Sarrami-Foroushani, A., Lassila, T., Gooya, A., Geers, A. J., and Frangi, A. F. (2016). Uncertainty quantification of wall shear stress in intracranial aneurysms using a data-driven statistical model of systemic blood flow variability. J Biomech, 49(16):3815–3823. DOI: 10.1016/j.jbiomech.2016.10.005.

journals Bib

@article{Sarrami-Foroushani2016,
  doi = {10.1016/j.jbiomech.2016.10.005},
  pages = {3815--3823},
  number = {16},
  volume = {49},
  year = {2016},
  journal = {J Biomech},
  title = {Uncertainty quantification of wall shear stress in intracranial aneurysms using a data-driven statistical model of systemic blood flow variability},
  author = {Sarrami-Foroushani, A. and Lassila, T. and Gooya, A. and Geers, A. J. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Vergara, C., Lange, M., Palamara, S., Lassila, T., Frangi, A. F., and 1 more author. (2016). A coupled 3D-1D numerical monodomain solver for cardiac electrical activation in the myocardium with detailed Purkinje network. J Comput Phys, 308:218–238. DOI: 10.1016/j.jcp.2015.12.016.

journals Bib

@article{Vergara2016,
  doi = {10.1016/j.jcp.2015.12.016},
  pages = {218--238},
  volume = {308},
  year = {2016},
  journal = {J Comput Phys},
  title = {A coupled {{3D}}-{1D} numerical monodomain solver for cardiac electrical activation in the myocardium with detailed Purkinje network},
  author = {Vergara, C. and Lange, M. and Palamara, S. and Lassila, T. and Frangi, A. F. and Quarteroni, A.},
  programmes = {is-modelling},
}

Yao, J., Burns, J. E., Forsberg, D., Seitel, A., Rasoulian, A., and 11 more authors. (2016). A multi-center milestone study of clinical vertebral CT segmentation. Comput Med Imaging Graph, 49:16–28. DOI: 10.1016/j.compmedimag.2015.12.006.

journals Bib

@article{Yao2016,
  doi = {10.1016/j.compmedimag.2015.12.006},
  pages = {16--28},
  volume = {49},
  year = {2016},
  journal = {Comput Med Imaging Graph},
  title = {A multi-center milestone study of clinical vertebral {CT} segmentation},
  author = {Yao, J. and Burns, J. E. and Forsberg, D. and Seitel, A. and Rasoulian, A. and Abolmaesumi, P. and Hammernik, K. and Urschler, M. and Ibragimov, B. and Korez, R. and Vrtovec, T. and Castro-Mateos, I. and Pozo, J. M. and Frangi, A. F. and Summers, R. M. and Li, S.},
  programmes = {cp-realworld},
}

Tsaftaris, S. A., Gooya, A., Frangi, A. F., and Prince, J. L. (Eds.). (2016). Simulation and Synthesis in Medical Imaging: Proceedings of the International Workshop SASHIMI 2016. Berlin: Springer-Verlag.

ISBN: 978-3-319-46629-3. Series: Lecture Notes in Computer Science. Volume: 9968.

books Bib

@book{Book_Tsaftaris2016,
  subtitle = {Proceedings of the International Workshop {SASHIMI} 2016},
  editor = {Tsaftaris, S. A. and Gooya, A. and Frangi, A. F. and Prince, J. L.},
  isbn = {978-3-319-46629-3},
  volume = {9968},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2016},
  title = {Simulation and Synthesis in Medical Imaging},
  programmes = {cp-realworld, cp-twinning},
}

Vrtovec, T., Yao, J., Glocker, B., Klinder, T., Frangi, A. F., and 2 more authors. (Eds.). (2016). Computational Methods and Clinical Applications for Spine Imaging: Proceedings of the International Workshop and Challenge Computational Spine Imaging (CSI2015). Berlin: Springer-Verlag.

ISBN: 978-3-319-41826-1. Series: Lecture Notes in Computer Science. Volume: 9402.

books Bib

@book{Book_Vrtovec2016,
  subtitle = {Proceedings of the International Workshop and Challenge Computational Spine Imaging ({CSI}2015)},
  editor = {Vrtovec, T. and Yao, J. and Glocker, B. and Klinder, T. and Frangi, A. F. and Zheng, G. and Li, S.},
  isbn = {978-3-319-41826-1},
  volume = {9402},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2016},
  title = {Computational Methods and Clinical Applications for Spine Imaging},
  programmes = {cp-realworld},
}

Duchateau, N., Piella, G., Frangi, A. F., and De Craene, M. (2016). Learning pathological deviations from a normal pattern of myocardial motion: Added value for CRT studies?. In Wu, G., Shen, D., and Sabuncu, M. (Eds.). Machine Learning and Medical Imaging. (pp. 365–82). Elsevier.

chapters Bib

@inbook{Duchateau2016,
  editor = {Wu, G. and Shen, D. and Sabuncu, M.},
  pages = {365--82},
  publisher = {Elsevier},
  booktitle = {Machine Learning and Medical Imaging},
  year = {2016},
  title = {Learning pathological deviations from a normal pattern of myocardial motion: Added value for {CRT} studies?},
  author = {Duchateau, N. and Piella, G. and Frangi, A. F. and {De Craene}, M.},
  programmes = {cp-realworld},
}

Cimen, S., and Frangi, A. F. (2016). Method and Apparatus for Modelling Non-rigid Networks. Patent Application WO 2016/030692 A1. World Intellectual Property Organization. Available at: https://lens.org/146-615-565-018-562.

patents

Frangi, A. F. (2016). Café Scientific, Chesterfield. CISTIB. Available at: http://tinyurl.com/zdmrot6.

Video.

outreach Bib

@online{CafeScientific,
  note = {Video},
  url = {http://tinyurl.com/zdmrot6},
  publisher = {CISTIB},
  year = {2016},
  title = {Caf\'{e} Scientific, Chesterfield},
  author = {Frangi, A. F.},
  programmes = {is-ecosystems},
}

2015

Beltrachini, L., Taylor, Z. A., and Frangi, A. F. (2015). A parametric finite element solution of the generalised Bloch-Torrey equation for arbitrary domains. J Magn Reson, 259:126–34. DOI: 10.1016/j.jmr.2015.08.008.

journals Bib

@article{Beltrachini2015,
  doi = {10.1016/j.jmr.2015.08.008},
  pages = {126--34},
  volume = {259},
  year = {2015},
  journal = {J Magn Reson},
  title = {A parametric finite element solution of the generalised Bloch-Torrey equation for arbitrary domains},
  author = {Beltrachini, L. and Taylor, Z. A. and Frangi, A. F.},
  programmes = {cp-twinning},
}

Beltrachini, L., De Marco, M., Taylor, Z. A., Lotjonen, J., Frangi, A. F., and 1 more author. (2015). Integration of cognitive tests and resting state fMRI for the individual identification of mild cognitive impairment. Curr Alzheimer Res, 12(6):592–603. DOI: 10.2174/156720501206150716120332.

journals Bib

@article{Beltrachini2015a,
  doi = {10.2174/156720501206150716120332},
  pages = {592--603},
  number = {6},
  volume = {12},
  year = {2015},
  journal = {Curr Alzheimer Res},
  title = {Integration of cognitive tests and resting state fMRI for the individual identification of mild cognitive impairment},
  author = {Beltrachini, L. and De Marco, M. and Taylor, Z. A. and Lotjonen, J. and Frangi, A. F. and Venneri, A.},
  programmes = {cp-realworld},
}

Castro-Mateos, I., Pozo, J. M., Pereanez, M., Lekadir, K., Lazary, A., and 1 more author. (2015). Statistical interspace models (SIMs): application to robust 3D spine segmentation. IEEE Trans Med Imaging, 34(8):1663–75. DOI: 10.1109/tmi.2015.2443912.

journals Bib

@article{Castro-Mateos2015,
  doi = {10.1109/tmi.2015.2443912},
  pages = {1663--75},
  number = {8},
  volume = {34},
  year = {2015},
  journal = {{IEEE} Trans Med Imaging},
  title = {Statistical interspace models (SIMs): application to robust {{3D}} spine segmentation},
  author = {Castro-Mateos, I. and Pozo, J. M. and Pereanez, M. and Lekadir, K. and Lazary, A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Cito, S., Geers, A. J., Arroyo, M. P., Palero, V. R., Pallares, J., and 11 more authors. (2015). Accuracy and Reproducibility of Patient-Specific Hemodynamic Models of Stented Intracranial Aneurysms: Report on the Virtual Intracranial Stenting Challenge 2011. Ann Biomed Eng, 43(1):154–167. DOI: 10.1007/s10439-014-1082-9.

journals Bib

@article{Cito2015,
  doi = {10.1007/s10439-014-1082-9},
  pages = {154--167},
  number = {1},
  volume = {43},
  year = {2015},
  journal = {Ann Biomed Eng},
  title = {Accuracy and Reproducibility of Patient-Specific Hemodynamic Models of Stented Intracranial Aneurysms: Report on the Virtual Intracranial Stenting Challenge 2011},
  author = {Cito, S. and Geers, A. J. and Arroyo, M. P. and Palero, V. R. and Pallares, J. and Vernet, A. and Blasco, J. and {San Roman}, L. and Fu, W. and Qiao, A. and Janiga, G. and Miura, Y. and Ohta, M. and Mendina, M. and Usera, G. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Di Marco, L. Y., Venneri, A., Farkas, E., Evans, P. C., Marzo, A., and 1 more author. (2015). Vascular dysfunction in the pathogenesis of Alzheimer’s disease–a review of endothelium-mediated mechanisms and ensuing vicious circles. Neurobiol Dis, 82:593–606. DOI: 10.1016/j.nbd.2015.08.014.

journals Bib

@article{DiMarco2015,
  doi = {10.1016/j.nbd.2015.08.014},
  pages = {593--606},
  volume = {82},
  year = {2015},
  journal = {Neurobiol Dis},
  title = {Vascular dysfunction in the pathogenesis of Alzheimer's disease--a review of endothelium-mediated mechanisms and ensuing vicious circles},
  author = {Di Marco, L. Y. and Venneri, A. and Farkas, E. and Evans, P. C. and Marzo, A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Di Marco, L. Y., Farkas, E., Martin, C., Venneri, A., and Frangi, A. F. (2015). Is vasomotion in cerebral arteries impaired in Alzheimer’s disease?. J Alzheimers Dis, 46(1):35–53. DOI: 10.3233/jad-142976.

journals Bib

@article{DiMarco2015a,
  doi = {10.3233/jad-142976},
  pages = {35--53},
  number = {1},
  volume = {46},
  year = {2015},
  journal = {J Alzheimers Dis},
  title = {Is vasomotion in cerebral arteries impaired in Alzheimer's disease?},
  author = {Di Marco, L. Y. and Farkas, E. and Martin, C. and Venneri, A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Dimitri, P., Jacques, R. M., Paggiosi, M., King, D., Walsh, J., and 4 more authors. (2015). Leptin may play a role in bone microstructural alterations in obese children. J Clin Endocrinol Metab, 100(2):594–602. DOI: 10.1210/jc.2014-3199.

journals Bib

@article{Dimitri2015,
  doi = {10.1210/jc.2014-3199},
  pages = {594--602},
  number = {2},
  volume = {100},
  year = {2015},
  journal = {J Clin Endocrinol Metab},
  title = {Leptin may play a role in bone microstructural alterations in obese children},
  author = {Dimitri, P. and Jacques, R. M. and Paggiosi, M. and King, D. and Walsh, J. and Taylor, Z. A. and Frangi, A. F. and Bishop, N. and Eastell, R.},
  programmes = {cp-realworld},
}

Gooya, A., Davatzikos, C., and Frangi, A. F. (2015). A Bayesian approach to sparse model selection in statistical shape models. SIAM J Imag Sci, 8(2):858–887. DOI: 10.1137/140982039.

journals Bib

@article{Gooya2015a,
  doi = {10.1137/140982039},
  pages = {858--887},
  number = {2},
  volume = {8},
  year = {2015},
  journal = {SIAM J Imag Sci},
  title = {A {B}ayesian approach to sparse model selection in statistical shape models},
  author = {Gooya, A. and Davatzikos, C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Lekadir, K., Hoogendoorn, C., Hazrati-Marangalou, J., Taylor, Z. A., Noble, C., and 2 more authors. (2015). A predictive model of vertebral trabecular anisotropy from ex vivo micro-CT. IEEE Trans Med Imaging, 34(8):1747–59. DOI: 10.1109/tmi.2014.2387114.

journals Bib

@article{Lekadir2015,
  doi = {10.1109/tmi.2014.2387114},
  pages = {1747--59},
  number = {8},
  volume = {34},
  year = {2015},
  journal = {{IEEE} Trans Med Imaging},
  title = {A predictive model of vertebral trabecular anisotropy from ex vivo micro-{CT}},
  author = {Lekadir, K. and Hoogendoorn, C. and Hazrati-Marangalou, J. and Taylor, Z. A. and Noble, C. and {van Rietbergen}, B. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Lekadir, K., Hazrati-Marangalou, J., Hoogendoorn, C., Taylor, Z. A., van Rietbergen, B., and 1 more author. (2015). Statistical estimation of femur micro-architecture using optimal shape and density predictors. J Biomech, 48(4):598–603. DOI: 10.1016/j.jbiomech.2015.01.002.

journals Bib

@article{Lekadir2015a,
  doi = {10.1016/j.jbiomech.2015.01.002},
  pages = {598--603},
  number = {4},
  volume = {48},
  year = {2015},
  journal = {J Biomech},
  title = {Statistical estimation of femur micro-architecture using optimal shape and density predictors},
  author = {Lekadir, K. and Hazrati-Marangalou, J. and Hoogendoorn, C. and Taylor, Z. A. and {van Rietbergen}, B. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Malandrino, A., Pozo, J. M., Castro-Mateos, I., Frangi, A. F., Rijsbergen, M. M., and 5 more authors. (2015). On the relative relevance of subject-specific geometries and degeneration-specific mechanical properties for the study of cell death in human intervertebral disk models. Front Bioeng Biotechnol, 3:5. DOI: 10.3389/fbioe.2015.00005.

journals Bib

@article{Malandrino2015,
  doi = {10.3389/fbioe.2015.00005},
  pages = {5},
  volume = {3},
  year = {2015},
  journal = {Front Bioeng Biotechnol},
  title = {On the relative relevance of subject-specific geometries and degeneration-specific mechanical properties for the study of cell death in human intervertebral disk models},
  author = {Malandrino, A. and Pozo, J. M. and Castro-Mateos, I. and Frangi, A. F. and van Rijsbergen, M. M. and Ito, K. and Wilke, H. J. and Dao, T. T. and Ho Ba Tho, M. C. and Noailly, J.},
  programmes = {is-modelling},
}

Morris, R. M., Yang, L., Martı́n-Fernández, M. A., Pozo, J. M., Frangi, A. F., and 1 more author. (2015). High-spatial-resolution bone densitometry with dual-energy x-ray absorptiometric region-free analysis. Radiology, 274(2):532–9. DOI: 10.1148/radiol.15154008.

journals Bib

@article{Morris2015,
  doi = {10.1148/radiol.15154008},
  pages = {532--9},
  number = {2},
  volume = {274},
  year = {2015},
  journal = {Radiology},
  title = {High-spatial-resolution bone densitometry with dual-energy x-ray absorptiometric region-free analysis},
  author = {Morris, R. M. and Yang, L. and Mart\'{\i}n-Fern\'{a}ndez, M. A. and Pozo, J. M. and Frangi, A. F. and Wilkinson, J. M.},
  programmes = {cp-realworld},
}

Pereañez, M., Lekadir, K., Castro-Mateos, I., Pozo, J. M., Lazáry, \., and 1 more author. (2015). Accurate segmentation of vertebral bodies and processes using statistical shape decomposition and conditional models. IEEE Trans Med Imaging, 34(8):1627–39.

journals Bib

@article{Pereanez2015,
  pages = {1627--39},
  number = {8},
  volume = {34},
  year = {2015},
  journal = {{IEEE} Trans Med Imaging},
  title = {Accurate segmentation of vertebral bodies and processes using statistical shape decomposition and conditional models},
  author = {Perea\~{n}ez, M. and Lekadir, K. and Castro-Mateos, I. and Pozo, J. M. and Laz\'{a}ry, \. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Sarrami-Foroushani, A., Villa-Uriol, M. C., Nasr Esfahany, M., Coley, S. C., Di Marco, L. Y., and 2 more authors. (2015). Modeling of the acute effects of primary hypertension and hypotension on the hemodynamics of intracranial aneurysms. Ann Biomed Eng, 43(1):207–21. DOI: 10.1007/s10439-014-1076-7.

journals Bib

@article{Sarrami-Foroushani2015,
  doi = {10.1007/s10439-014-1076-7},
  pages = {207--21},
  number = {1},
  volume = {43},
  year = {2015},
  journal = {Ann Biomed Eng},
  title = {Modeling of the acute effects of primary hypertension and hypotension on the hemodynamics of intracranial aneurysms},
  author = {Sarrami-Foroushani, A. and Villa-Uriol, M. C. and Nasr Esfahany, M. and Coley, S. C. and Di Marco, L. Y. and Frangi, A. F. and Marzo, A.},
  programmes = {is-modelling},
}

Sarrami-Foroushani, A., Nasr Esfahany, M., Nasiraei Moghaddam, A., Saligheh Rad, H., Firouznia, K., and 4 more authors. (2015). Velocity measurement in carotid artery: quantitative comparison of time-resolved 3D phase-contrast MRI and image-based computational fluid dynamics. Iran J Radiol, 12(4). DOI: 10.5812/iranjradiol.18286.

journals Bib

@article{Sarrami-Foroushani2015a,
  doi = {10.5812/iranjradiol.18286},
  number = {4},
  volume = {12},
  year = {2015},
  journal = {{Iran} J Radiol},
  title = {Velocity measurement in carotid artery: quantitative comparison of time-resolved {{3D}} phase-contrast {MRI} and image-based computational fluid dynamics},
  author = {Sarrami-Foroushani, A. and Nasr Esfahany, M. and Nasiraei Moghaddam, A. and Saligheh Rad, H. and Firouznia, K. and Shakiba, M. and Ghanaati, H. and Wilkinson, I. D. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Wilkinson, J. M., Morris, R. M., Martin-Fernandez, M. A., Pozo, J. M., Frangi, A. F., and 2 more authors. (2015). Use of high resolution dual-energy x-ray absorptiometry-region free analysis (DXA-RFA) to detect local periprosthetic bone remodeling events. J Orthop Res, 33(5):712–6. DOI: 10.1002/jor.22823. Available at: http://www.ncbi.nlm.nih.gov/pubmed/25640686.

journals Bib

@article{Wilkinson2015,
  url = {http://www.ncbi.nlm.nih.gov/pubmed/25640686},
  doi = {10.1002/jor.22823},
  pages = {712--6},
  number = {5},
  volume = {33},
  year = {2015},
  journal = {J Orthop Res},
  title = {Use of high resolution dual-energy x-ray absorptiometry-region free analysis ({DXA-RFA}) to detect local periprosthetic bone remodeling events},
  author = {Wilkinson, J. M. and Morris, R. M. and Martin-Fernandez, M. A. and Pozo, J. M. and Frangi, A. F. and Maheson, M. and Yang, L.},
  programmes = {cp-realworld},
}

Zimmer, V. A., Lekadir, K., Hoogendoorn, C., Frangi, A. F., and Piella, G. (2015). A framework for optimal kernel-based manifold embedding of medical image data. Comput Med Imaging Graph, 41:93–107. DOI: 10.1016/j.compmedimag.2014.06.001.

journals Bib

@article{Zimmer2015,
  doi = {10.1016/j.compmedimag.2014.06.001},
  pages = {93--107},
  volume = {41},
  year = {2015},
  journal = {Comput Med Imaging Graph},
  title = {A framework for optimal kernel-based manifold embedding of medical image data},
  author = {Zimmer, V. A. and Lekadir, K. and Hoogendoorn, C. and Frangi, A. F. and Piella, G.},
  programmes = {cp-realworld},
}

Navab, N., Hornegger, J., Wells, W. M., and Frangi, A. F. (Eds.). (2015). Medical Image Computing and Computer-Assisted Intervention (MICCAI): Proceedings of the International Conference MICCAI 2015 – Part I: Advanced MRI: Diffusion, fMRI, DCE; Computer Assisted and Image-guided Interventions; Computer Aided Diagnosis: Machine Learning. Berlin: Springer-Verlag.

ISBN: 978-3-319-24552-2. Series: Lecture Notes in Computer Science. Volume: 9349.

books Bib

@book{Book_Navab2015a,
  subtitle = {Proceedings of the International Conference {MICCAI} 2015 -- Part I: Advanced MRI: Diffusion, fMRI, DCE; Computer Assisted and Image-guided Interventions; Computer Aided Diagnosis: Machine Learning},
  editor = {Navab, N. and Hornegger, J. and Wells, W. M. and Frangi, A. F.},
  isbn = {978-3-319-24552-2},
  volume = {9349},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2015},
  title = {Medical Image Computing and Computer-Assisted Intervention ({MICCAI})},
  programmes = {cp-realworld},
}

Navab, N., Hornegger, J., Wells, W. M., and Frangi, A. F. (Eds.). (2015). Medical Image Computing and Computer-Assisted Intervention (MICCAI): Proceedings of the International Conference MICCAI 2015 – Part II: Quantitative Image Analysis II: Classification, Detection, Features, and Morphology, Advanced MRI: Diffusion, fMRI, DCE; Quantitative Image Analysis III: Motion, Deformation, Development and Degeneration; Quantitative Image Analysis IV: Microscopy, Fluorescence and Histological Imagery. Berlin: Springer-Verlag.

ISBN: 978-3-319-24570-6. Series: Lecture Notes in Computer Science. Volume: 9350.

books Bib

@book{Book_Navab2015b,
  subtitle = {Proceedings of the International Conference {MICCAI} 2015 -- Part II: Quantitative Image Analysis II: Classification, Detection, Features, and Morphology, Advanced MRI: Diffusion, fMRI, DCE; Quantitative Image Analysis III: Motion, Deformation, Development and Degeneration; Quantitative Image Analysis IV: Microscopy, Fluorescence and Histological Imagery},
  editor = {Navab, N. and Hornegger, J. and Wells, W. M. and Frangi, A. F.},
  isbn = {978-3-319-24570-6},
  volume = {9350},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2015},
  title = {Medical Image Computing and Computer-Assisted Intervention ({MICCAI})},
  programmes = {cp-realworld},
}

Navab, N., Hornegger, J., Wells, W. M., and Frangi, A. F. (Eds.). (2015). Medical Image Computing and Computer-Assisted Intervention (MICCAI): Proceedings of the International Conference MICCAI 2015 – Part III: Quantitative Image Analysis I: Segmentation and Measurement; Quantitative Image Analysis IV: Microscopy, Fluorescence and Histological Imagery; Quantitative Image Analysis III: Motion, Deformation, Development and Degeneration; Quantitative Image Analysis II: Classification, Detection, Features, and Morphology. Berlin: Springer-Verlag.

ISBN: 978-3-319-24573-7. Series: Lecture Notes in Computer Science. Volume: 9351.

books Bib

@book{Book_Navab2015c,
  subtitle = {Proceedings of the International Conference {MICCAI} 2015 -- Part III: Quantitative Image Analysis I: Segmentation and Measurement; Quantitative Image Analysis IV: Microscopy, Fluorescence and Histological Imagery; Quantitative Image Analysis III: Motion, Deformation, Development and Degeneration; Quantitative Image Analysis II: Classification, Detection, Features, and Morphology},
  editor = {Navab, N. and Hornegger, J. and Wells, W. M. and Frangi, A. F.},
  isbn = {978-3-319-24573-7},
  volume = {9351},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2015},
  title = {Medical Image Computing and Computer-Assisted Intervention ({MICCAI})},
  programmes = {cp-realworld},
}

Radaelli, A. G., Bogunović, H., Villa-Uriol, M. C., Cebral, J. R., and Frangi, A. F. (2015). Image-based haemodynamics simulation in intracranial aneurysms. In Paragios, N., Duncan, J., and Ayache, N. (Eds.). Handbook of Biomedical Imaging: Methodologies and Clinical Research. (pp. 199–217). Boston, MA: Springer US.

chapters Bib

@inbook{Radaelli2015,
  doi = {10.1007/978-0-387-09749-7_11},
  editor = {Paragios, N. and Duncan, J. and Ayache, N.},
  pages = {199--217},
  publisher = {Springer US},
  booktitle = {Handbook of Biomedical Imaging: Methodologies and Clinical Research},
  year = {2015},
  title = {Image-based haemodynamics simulation in intracranial aneurysms},
  author = {Radaelli, A. G. and Bogunovi\'{c}, H. and Villa-Uriol, M. C. and Cebral, J. R. and Frangi, A. F.},
  location = {Boston, MA},
  programmes = {is-modelling},
}

Barbarito, V., Carotenuto, L., Serra Del Molino, L., Frangi, A. F., Brugada, J., and 1 more author. (2015). Computer Implemented Methods for Identifying Channels in a 3D Volume and Computer Program Product Implementing the Methods. Patent Application US 2015/0356742 A1. United States. Available at: https://lens.org/086-877-529-831-869.

patents

Frangi, A. F. (2015). MySpine Project Overview. EuroNews. Available at: http://tinyurl.com/jd8e8nm.

Video.

outreach Bib

@online{MySpine1,
  note = {Video},
  url = {http://tinyurl.com/jd8e8nm},
  publisher = {EuroNews},
  year = {2015},
  title = {MySpine Project Overview},
  author = {Frangi, A. F.},
  programmes = {is-modelling},
}

Frangi, A. F. (2015). Can Computer Heal Spines? Do you know?. EuroNews. Available at: http://tinyurl.com/jjozs4r.

Video.

outreach Bib

@online{MySpine2,
  note = {Video},
  url = {http://tinyurl.com/jjozs4r},
  publisher = {EuroNews},
  year = {2015},
  title = {Can Computer Heal Spines? Do you know?},
  author = {Frangi, A. F.},
  programmes = {is-modelling},
}

Frangi, A. F. (2015). Sheffield Festival of Science & Engineering, Interview. CISTIB. Available at: http://tinyurl.com/he3w45x.

Video.

outreach Bib

@online{SheffieldFestivalSaE,
  note = {Video},
  url = {http://tinyurl.com/he3w45x},
  publisher = {CISTIB},
  year = {2015},
  title = {Sheffield Festival of Science \& Engineering, Interview},
  author = {Frangi, A. F.},
  programmes = {is-ecosystems},
}

Frangi, A. F. (2015). VPH-DARE-IT Platforms Overview. CISTIB. ICT2015 Conference. Available at: http://tinyurl.com/jcxhphh.

Video.

outreach Bib

@online{VPH_DARE1,
  eventname = {ICT2015 Conference},
  note = {Video},
  url = {http://tinyurl.com/jcxhphh},
  publisher = {CISTIB},
  year = {2015},
  title = {VPH-DARE-IT Platforms Overview},
  author = {Frangi, A. F.},
  programmes = {cp-twinning, is-ecosystems},
}

Frangi, A. F. (2015). VPH-DARE@IT Clinical Research Platforms Overview. CISTIB. ICT2015 Conference. Available at: http://tinyurl.com/jd2s2hq.

Video.

outreach Bib

@online{VPH_DARE2,
  eventname = {ICT2015 Conference},
  note = {Video},
  url = {http://tinyurl.com/jd2s2hq},
  publisher = {CISTIB},
  year = {2015},
  title = {VPH-DARE@IT Clinical Research Platforms Overview},
  author = {Frangi, A. F.},
  programmes = {cp-twinning, is-ecosystems},
}

Geers, A. J. (2015). Hemodynamic Modeling of Cerebral Aneurysms. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and Larrabide, I.

Cum Laude.

theses
Castro-Mateos, I. (2015). Statistical Anatomical Modelling for Efficient and Personalized Spine Biomechanical Models. PhD Thesis, University of Sheffield. Supervised by Frangi, A. F., and Pozo, J. M.

theses
Porras-Perez, A. R. (2015). Multi-cue Image Integration for Cardiac Tissue Characterization. PhD Thesis, Universitat Pompeu Fabra. Supervised by Piella, G., and Frangi, A. F.

Cum Laude.

theses

2014

Alba, X., Figueras I Ventura, R. M., Lekadir, K., Tobon-Gomez, C., Hoogendoorn, C., and 1 more author. (2014). Automatic cardiac lv segmentation in MRI using modified graph cuts with smoothness and interslice constraints. Magn Reson Med, 72(6):1775–1784. DOI: 10.1002/mrm.25079.

journals Bib

@article{Alba2014,
  doi = {10.1002/mrm.25079},
  pages = {1775--1784},
  number = {6},
  volume = {72},
  year = {2014},
  journal = {Magn Reson Med},
  title = {Automatic cardiac lv segmentation in {MRI} using modified graph cuts with smoothness and interslice constraints},
  author = {Alba, X. and Figueras I Ventura, R. M. and Lekadir, K. and Tobon-Gomez, C. and Hoogendoorn, C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Avegliano, G., Costabel, J. P., Huguet, M., Thierer, J., Trivi, M., and 5 more authors. (2014). Influence of dynamic obstruction and hypertrophy location on diastolic function in hypertrophic cardiomyopathy. J Cardiovasc Med, 15(3):207–213. DOI: 10.2459/jcm.0b013e3283638093.

journals Bib

@article{Avegliano2014,
  doi = {10.2459/jcm.0b013e3283638093},
  pages = {207--213},
  number = {3},
  volume = {15},
  year = {2014},
  journal = {J Cardiovasc Med},
  title = {Influence of dynamic obstruction and hypertrophy location on diastolic function in hypertrophic cardiomyopathy},
  author = {Avegliano, G. and Costabel, J. P. and Huguet, M. and Thierer, J. and Trivi, M. and Catalina, T.-G. and Petit, M. and Bijnens, B. and Frangi, A. F. and Ronderos, R.},
  programmes = {cp-realworld},
}

Castro-Mateos, I., Pozo, J. M., Cootes, T. F., Wilkinson, J. M., Eastell, R., and 1 more author. (2014). Statistical shape and appearance models in osteoporosis. Curr Osteoporos Rep, 12(2):163–173. DOI: 10.1007/s11914-014-0206-3.

journals Bib

@article{Castro-Mateos2014,
  doi = {10.1007/s11914-014-0206-3},
  pages = {163--173},
  number = {2},
  volume = {12},
  year = {2014},
  journal = {Curr Osteoporos Rep},
  title = {Statistical shape and appearance models in osteoporosis},
  author = {Castro-Mateos, I. and Pozo, J. M. and Cootes, T. F. and Wilkinson, J. M. and Eastell, R. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Di Marco, L. Y., Marzo, A., Munoz-Ruiz, M., Ikram, M. A., Kivipelto, M., and 6 more authors. (2014). Modifiable lifestyle factors in dementia: a systematic review of longitudinal observational cohort studies. J Alzheimers Dis, 42(1):119–135. DOI: 10.3233/jad-132225.

journals Bib

@article{DiMarco2014,
  doi = {10.3233/jad-132225},
  pages = {119--135},
  number = {1},
  volume = {42},
  year = {2014},
  journal = {J Alzheimers Dis},
  title = {Modifiable lifestyle factors in dementia: a systematic review of longitudinal observational cohort studies},
  author = {{Di Marco}, L. Y. and Marzo, A. and Munoz-Ruiz, M. and Ikram, M. A. and Kivipelto, M. and Ruefenacht, D. A. and Venneri, A. and Soininen, H. and Wanke, I. and Ventikos, Y. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Geers, A. J., Larrabide, I., Morales, H. G., and Frangi, A. F. (2014). Approximating hemodynamics of cerebral aneurysms with steady flow simulations. J Biomech, 47(1):178–185. DOI: 10.1016/j.jbiomech.2013.09.033.

journals Bib

@article{Geers2014,
  doi = {10.1016/j.jbiomech.2013.09.033},
  pages = {178--185},
  number = {1},
  volume = {47},
  year = {2014},
  journal = {J Biomech},
  title = {Approximating hemodynamics of cerebral aneurysms with steady flow simulations},
  author = {Geers, A. J. and Larrabide, I. and Morales, H. G. and Frangi, A. F.},
  programmes = {is-modelling},
}

Lekadir, K., Pashaei, A., Hoogendoorn, C., Pereanez, M., Alba, X., and 1 more author. (2014). Effect of statistically derived fiber models on the estimation of cardiac electrical activation. IEEE Trans Biomed Eng, 61(11):2740–2748. DOI: 10.1109/tbme.2014.2327025.

journals Bib

@article{Lekadir2014,
  doi = {10.1109/tbme.2014.2327025},
  pages = {2740--2748},
  number = {11},
  volume = {61},
  year = {2014},
  journal = {{IEEE} Trans Biomed Eng},
  title = {Effect of statistically derived fiber models on the estimation of cardiac electrical activation},
  author = {Lekadir, K. and Pashaei, A. and Hoogendoorn, C. and Pereanez, M. and Alba, X. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Lekadir, K., Hoogendoorn, C., Pereanez, M., Alba, X., Pashaei, A., and 1 more author. (2014). Statistical personalization of ventricular fiber orientation using shape predictors. IEEE Trans Med Imaging, 33(4):882–890. DOI: 10.1109/tmi.2013.2297333.

journals Bib

@article{Lekadir2014a,
  doi = {10.1109/tmi.2013.2297333},
  pages = {882--890},
  number = {4},
  volume = {33},
  year = {2014},
  journal = {{IEEE} Trans Med Imaging},
  title = {Statistical personalization of ventricular fiber orientation using shape predictors},
  author = {Lekadir, K. and Hoogendoorn, C. and Pereanez, M. and Alba, X. and Pashaei, A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Moosavi, M.-H., Fatouraee, N., Katoozian, H., Pashaei, A., Camara, O., and 1 more author. (2014). Numerical simulation of blood flow in the left ventricle and aortic sinus using magnetic resonance imaging and computational fluid dynamics. Comput Methods Biomech Biomed Engin, 17(7):740–749.

journals Bib

@article{Moosavi2014,
  pages = {740--749},
  number = {7},
  volume = {17},
  year = {2014},
  journal = {Comput Methods Biomech Biomed Engin},
  title = {Numerical simulation of blood flow in the left ventricle and aortic sinus using magnetic resonance imaging and computational fluid dynamics},
  author = {Moosavi, M.-H. and Fatouraee, N. and Katoozian, H. and Pashaei, A. and Camara, O. and Frangi, A. F.},
  programmes = {is-modelling},
}

Pavani, S.-K., Delgado-Gomez, D., and Frangi, A. F. (2014). Gaussian weak classifiers based on co-occurring Haar-like features for face detection. Pattern Anal Appl, 17(2):431–439.

journals Bib

@article{Pavani2014,
  pages = {431--439},
  number = {2},
  volume = {17},
  year = {2014},
  journal = {Pattern Anal Appl},
  title = {Gaussian weak classifiers based on co-occurring {Haar}-like features for face detection},
  author = {Pavani, S.-K. and Delgado-Gomez, D. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Pavani, S.-K., Delgado-Gomez, D., and Frangi, A. F. (2014). Fast training procedure for Viola-Jones type object detectors using Laplacian clutter models. Pattern Anal Appl, 17(2):441–449.

journals Bib

@article{Pavani2014a,
  pages = {441--449},
  number = {2},
  volume = {17},
  year = {2014},
  journal = {Pattern Anal Appl},
  title = {Fast training procedure for {V}iola-{J}ones type object detectors using Laplacian clutter models},
  author = {Pavani, S.-K. and Delgado-Gomez, D. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Pereanez, M., Lekadir, K., Butakoff, C., Hoogendoorn, C., and Frangi, A. F. (2014). A framework for the merging of pre-existing and correspondenceless 3D statistical shape models. Med Image Anal, 18(7):1044–1058. DOI: 10.1016/j.media.2014.05.009.

journals Bib

@article{Pereanez2014,
  doi = {10.1016/j.media.2014.05.009},
  pages = {1044--1058},
  number = {7},
  volume = {18},
  year = {2014},
  journal = {Med Image Anal},
  title = {A framework for the merging of pre-existing and correspondenceless {{3D}} statistical shape models},
  author = {Pereanez, M. and Lekadir, K. and Butakoff, C. and Hoogendoorn, C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Porras, A. R., Alessandrini, M., De Craene, M., Duchateau, N., Sitges, M., and 6 more authors. (2014). Improved myocardial motion estimation combining tissue Doppler and b-mode echocardiographic images. IEEE Trans Med Imaging, 33(11):2098–2106. DOI: 10.1109/tmi.2014.2331392.

journals Bib

@article{Porras2014,
  doi = {10.1109/tmi.2014.2331392},
  pages = {2098--2106},
  number = {11},
  volume = {33},
  year = {2014},
  journal = {{IEEE} Trans Med Imaging},
  title = {Improved myocardial motion estimation combining tissue {Doppler} and b-mode echocardiographic images},
  author = {Porras, A. R. and Alessandrini, M. and {De Craene}, M. and Duchateau, N. and Sitges, M. and Bijnens, B. H. and Delingette, H. and Sermesant, M. and D'Hooge, J. and Frangi, A. F. and Piella, G.},
  programmes = {cp-realworld},
}

Porras, A. R., Piella, G., Berruezo, A., Fernández-Armenta, J., and Frangi, A. F. (2014). Pre to Intraoperative Data Fusion Framework for Multimodal Characterization of Myocardial Scar Tissue.. IEEE J Transl Eng Health Med., 4(2):1900211. DOI: 10.1109/jtehm.2014.2354332.

journals Bib

@article{Porras2014a,
  doi = {10.1109/jtehm.2014.2354332},
  pages = {1900211},
  number = {2},
  volume = {4},
  year = {2014},
  journal = {IEEE J Transl Eng Health Med.},
  title = {Pre to Intraoperative Data Fusion Framework for Multimodal Characterization of Myocardial Scar Tissue.},
  author = {Porras, A. R. and Piella, G. and Berruezo, A. and Fernández-Armenta, J. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Barbarito, V., Carotenuto, L., Serra Del Molino, L., Frangi, A. F., Brugada, J., and 1 more author. (2014). Computer Implemented Methods for Identifying Channels in a 3D Volume and Computer Program Product Implementing the Methods. Patent Application WO 2014/111787 A1. World Intellectual Property Organization. Available at: https://lens.org/077-893-349-918-223.

patents
Hoogendoorn, C. (2014). A Statistical Dynamic Cardiac Atlas for the Virtual Physiological Human: Construction and Application. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F.

Cum Laude.

theses

2013

Bijlenga, P., Ebeling, C., Jaegersberg, M., Summers, P., Rogers, A., and 13 more authors. (2013). Risk of rupture of small anterior communicating artery aneurysms is similar to posterior circulation aneurysms. Stroke, 44(11):3018–3026.

journals Bib

@article{Bijlenga2013,
  pages = {3018--3026},
  number = {11},
  volume = {44},
  year = {2013},
  journal = {Stroke},
  author = {Bijlenga, P. and Ebeling, C. and Jaegersberg, M. and Summers, P. and Rogers, A. and Waterworth, A. and Iavindrasana, J. and Macho, J. and Pereira, V. M. and Bukovics, P. and Vivas, E. and Sturkenboom, M. C. J. M. and Wright, J. and Friedrich, C. M. and Frangi, A. F. and Byrne, J. and Schaller, K. and Rufenacht, D. A.},
  programmes = {cp-realworld},
}

Bogunovic, H., Pozo, J. M., Cardenes, R., San Roman, L., and Frangi, A. F. (2013). Anatomical labeling of the Circle of Willis using maximum a posteriori probability estimation. IEEE Trans Med Imaging, 32(9):1587–1599. DOI: 10.1109/tmi.2013.2259595.

journals Bib

@article{Bogunovic2013,
  doi = {10.1109/tmi.2013.2259595},
  pages = {1587--1599},
  number = {9},
  volume = {32},
  year = {2013},
  journal = {{IEEE} Trans Med Imaging},
  author = {Bogunovic, H. and Pozo, J. M. and Cardenes, R. and San Roman, L. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Cardenes, R., Diez, J. L., Duchateau, N., Pashaei, A., and Frangi, A. F. (2013). Model generation of coronary artery bifurcations from CTA and single plane angiography. Med Phys, 40(1):e013701. DOI: 10.1118/1.4769118.

journals Bib

@article{Cardenes2013,
  doi = {10.1118/1.4769118},
  pages = {e013701},
  number = {1},
  volume = {40},
  year = {2013},
  journal = {Med Phys},
  title = {Model generation of coronary artery bifurcations from CTA and single plane angiography},
  author = {Cardenes, R. and Diez, J. L. and Duchateau, N. and Pashaei, A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Cardenes, R., Larrabide, I., San Roman, L., and Frangi, A. F. (2013). Performance assessment of isolation methods for geometrical cerebral aneurysm analysis. Med Biol Eng Comput, 51(3):343–352. DOI: 10.1007/s11517-012-1003-8.

journals Bib

@article{Cardenes2013a,
  doi = {10.1007/s11517-012-1003-8},
  pages = {343--352},
  number = {3},
  volume = {51},
  year = {2013},
  journal = {Med Biol Eng Comput},
  title = {Performance assessment of isolation methods for geometrical cerebral aneurysm analysis},
  author = {Cardenes, R. and Larrabide, I. and {San Roman}, L. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Fernandez-Armenta, J., Berruezo, A., Andreu, D., Camara, O., Silva, E., and 11 more authors. (2013). Three-dimensional architecture of scar and conducting channels based on high resolution ce-cmr: insights for ventricular tachycardia ablation. Circ Arrhythm Electrophysiol, 6(3):528–537.

journals Bib

@article{Fernandez-Armenta2013,
  pages = {528--537},
  number = {3},
  volume = {6},
  year = {2013},
  journal = {Circ Arrhythm Electrophysiol},
  title = {Three-dimensional architecture of scar and conducting channels based on high resolution ce-cmr: insights for ventricular tachycardia ablation},
  author = {Fernandez-Armenta, J. and Berruezo, A. and Andreu, D. and Camara, O. and Silva, E. and Serra, L. and Barbarito, V. and Carotenutto, L. and Evertz, R. and Ortiz-Perez, J. T. and {De Caralt}, M. T. and Perea, R. J. and Sitges, M. and Mont, L. and Frangi, A. F. and Brugada, J.},
  programmes = {cp-realworld},
}

Frangi, A. F., Hose, D. R., Hunter, P. J., Ayache, N., and Brooks, D. (2013). Special issue on medical imaging and image computing in computational physiology. IEEE Trans Med Imaging, 32(1):1–7.

journals Bib

@article{Frangi2013,
  pages = {1--7},
  number = {1},
  volume = {32},
  year = {2013},
  journal = {{IEEE} Trans Med Imaging},
  title = {Special issue on medical imaging and image computing in computational physiology},
  author = {Frangi, A. F. and Hose, D. R. and Hunter, P. J. and Ayache, N. and Brooks, D.},
  programmes = {cp-realworld, is-modelling},
}

Hoogendoorn, C., Duchateau, N., Sanchez-Quintana, D., Whitmarsh, T., Sukno, F. M., and 3 more authors. (2013). A high-resolution atlas and statistical model of the human heart from multislice ct. IEEE Trans Med Imaging, 32(1):28–44. DOI: 10.1109/tmi.2012.2230015.

journals Bib

@article{Hoogendoorn2013,
  doi = {10.1109/tmi.2012.2230015},
  pages = {28--44},
  number = {1},
  volume = {32},
  year = {2013},
  journal = {{IEEE} Trans Med Imaging},
  title = {A high-resolution atlas and statistical model of the human heart from multislice {ct}},
  author = {Hoogendoorn, C. and Duchateau, N. and Sanchez-Quintana, D. and Whitmarsh, T. and Sukno, F. M. and {De Craene}, M. and Lekadir, K. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Hunter, P., Chapman, T., Coveney, P. V., Bono, B., Diaz, V., and 19 more authors. (2013). A vision and strategy for the virtual physiological human: 2012 update. Interface Focus, 3(2). DOI: 10.1098/rsfs.2013.0004.

journals Bib

@article{Hunter2013,
  doi = {10.1098/rsfs.2013.0004},
  number = {2},
  volume = {3},
  year = {2013},
  journal = {Interface Focus},
  title = {A vision and strategy for the virtual physiological human: 2012 update},
  author = {Hunter, P. and Chapman, T. and Coveney, P. V. and de Bono, B. and Diaz, V. and Fenner, J. and Frangi, A. F. and Harris, P. and Hose, R. and Kohl, P. and Lawford, P. and McCormack, K. and Mendes, M. and Omholt, S. and Quarteroni, A. and Shublaq, N. and Skar, J. and Stroetmann, K. and Tegner, J. and Thomas, S. R. and Tollis, I. and Tsamardinos, I. and van Beek, J. H. G. M. and Viceconti, M.},
  programmes = {cp-twinning},
}

Larrabide, I., Aguilar, M. L., Morales, H. G., Geers, A. J., Kulcsar, Z., and 2 more authors. (2013). Intra-aneurysmal pressure and flow changes induced by flow diverters: relation to aneurysm size and shape. Am J Neuroradiol, 34(4):816–822. DOI: 10.3174/ajnr.a3288.

journals Bib

@article{Larrabide2013,
  doi = {10.3174/ajnr.a3288},
  pages = {816--822},
  number = {4},
  volume = {34},
  year = {2013},
  journal = {Am J Neuroradiol},
  title = {Intra-aneurysmal pressure and flow changes induced by flow diverters: relation to aneurysm size and shape},
  author = {Larrabide, I. and Aguilar, M. L. and Morales, H. G. and Geers, A. J. and Kulcsar, Z. and Ruefenacht, D. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Marchesseau, S., Delingette, H., Sermesant, M., Cabrera-Lozoya, R., Tobon-Gomez, C., and 14 more authors. (2013). Personalization of a cardiac electromechanical model using reduced order unscented Kalman filtering from regional volumes. Med Image Anal, 17(7):816–829. DOI: 10.1016/j.media.2013.04.012.

journals Bib

@article{Marchesseau2013,
  doi = {10.1016/j.media.2013.04.012},
  pages = {816--829},
  number = {7},
  volume = {17},
  year = {2013},
  journal = {Med Image Anal},
  title = {Personalization of a cardiac electromechanical model using reduced order unscented {Kalman} filtering from regional volumes},
  author = {Marchesseau, S. and Delingette, H. and Sermesant, M. and Cabrera-Lozoya, R. and Tobon-Gomez, C. and Moireau, P. and Figueras I Ventura, R. M. and Lekadir, K. and Hernandez, A. and Garreau, M. and Donal, E. and Leclercq, C. and Duckett, S. G. and Rhode, K. and Rinaldi, C. A. and Frangi, A. F. and Razavi, R. and Chapelle, D. and Ayache, N.},
  programmes = {is-modelling},
}

Marti Fuster, B., Esteban, O., Planes, X., Aguiar, P., Crespo, C., and 9 more authors. (2013). FocusDet, a new toolbox for SISCOM analysis. evaluation of the registration accuracy using Monte Carlo simulation. Neuroinformatics, 11(1):77–89. DOI: 10.1007/s12021-012-9158-x.

journals Bib

@article{MartiFuster2013,
  doi = {10.1007/s12021-012-9158-x},
  pages = {77--89},
  number = {1},
  volume = {11},
  year = {2013},
  journal = {Neuroinformatics},
  title = {FocusDet, a new toolbox for SISCOM analysis. evaluation of the registration accuracy using {Monte} {Carlo} simulation},
  author = {Marti Fuster, B. and Esteban, O. and Planes, X. and Aguiar, P. and Crespo, C. and Falcon, C. and Wollny, G. and Rubi Sureda, S. and Setoain, X. and Frangi, A. F. and Ledesma, M. J. and Santos, A. and Pavia, J. and Ros, D.},
  programmes = {cp-realworld, cp-twinning},
}

Morales, H. G., Larrabide, I., Geers, A. J., San Roman, L., Blasco, J., and 2 more authors. (2013). A virtual coiling technique for image-based aneurysm models by dynamic path planning. IEEE Trans Med Imaging, 32(1):119–129. DOI: 10.1109/tmi.2012.2219626.

journals Bib

@article{Morales2013,
  doi = {10.1109/tmi.2012.2219626},
  pages = {119--129},
  number = {1},
  volume = {32},
  year = {2013},
  journal = {{IEEE} Trans Med Imaging},
  title = {A virtual coiling technique for image-based aneurysm models by dynamic path planning},
  author = {Morales, H. G. and Larrabide, I. and Geers, A. J. and {San Roman}, L. and Blasco, J. and Macho, J. M. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Morales, H. G., Larrabide, I., Geers, A. J., Aguilar, M. L., and Frangi, A. F. (2013). Newtonian and non-newtonian blood flow in coiled cerebral aneurysms. J Biomech, 46(13):2158–2164. DOI: 10.1016/j.jbiomech.2013.06.034.

journals Bib

@article{Morales2013a,
  doi = {10.1016/j.jbiomech.2013.06.034},
  pages = {2158--2164},
  number = {13},
  volume = {46},
  year = {2013},
  journal = {J Biomech},
  title = {Newtonian and non-newtonian blood flow in coiled cerebral aneurysms},
  author = {Morales, H. G. and Larrabide, I. and Geers, A. J. and Aguilar, M. L. and Frangi, A. F.},
  programmes = {is-modelling},
}

Morales, H. G., Larrabide, I., Geers, A. J., Dai, D., Kallmes, D. F., and 1 more author. (2013). Analysis and quantification of endovascular coil distribution inside saccular aneurysms using histological images. J Neurointerv Surg, 5:III33–III37. DOI: 10.1136/neurintsurg-2012-010456.

journals Bib

@article{Morales2013b,
  doi = {10.1136/neurintsurg-2012-010456},
  pages = {III33--III37},
  volume = {5},
  year = {2013},
  journal = {J Neurointerv Surg},
  title = {Analysis and quantification of endovascular coil distribution inside saccular aneurysms using histological images},
  author = {Morales, H. G. and Larrabide, I. and Geers, A. J. and Dai, D. and Kallmes, D. F. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Perez, F., Huguet, J., Aguilar, R., Lara, L., Larrabide, I., and 12 more authors. (2013). RadStation3G: a platform for cardiovascular image analysis integrating pacs, 3D+t visualization and grid computing. Comput Methods Programs Biomed, 110(3):399–410. DOI: 10.1016/j.cmpb.2012.12.002.

journals Bib

@article{Perez2013,
  doi = {10.1016/j.cmpb.2012.12.002},
  pages = {399--410},
  number = {3},
  volume = {110},
  year = {2013},
  journal = {Comput Methods Programs Biomed},
  title = {RadStation3G: a platform for cardiovascular image analysis integrating pacs, {{3D}}+t visualization and grid computing},
  author = {Perez, F. and Huguet, J. and Aguilar, R. and Lara, L. and Larrabide, I. and Villa-Uriol, M. C. and Lopez, J. and Macho, J. M. and Rigo, A. and Rossello, J. and Vera, S. and Vivas, E. and Fernandez, J. and Arbona, A. and Frangi, A. F. and Herrero Jover, J. and Gonzalez Ballester, M. A.},
  programmes = {cp-realworld, is-ecosystems},
}

Piella, G., De Craene, M., Butakoff, C., Grau, V., Yao, C., and 3 more authors. (2013). Multiview diffeomorphic registration: application to motion and strain estimation from 3D echocardiography. Med Image Anal, 17(3):348–364. DOI: 10.1016/j.media.2013.01.002.

journals Bib

@article{Piella2013,
  doi = {10.1016/j.media.2013.01.002},
  pages = {348--364},
  number = {3},
  volume = {17},
  year = {2013},
  journal = {Med Image Anal},
  title = {Multiview diffeomorphic registration: application to motion and strain estimation from {{3D}} echocardiography},
  author = {Piella, G. and {De Craene}, M. and Butakoff, C. and Grau, V. and Yao, C. and Nedjati-Gilani, S. and Penney, G. P. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Porras, A. R., Piella, G., Berruezo, A., Hoogendoorn, C., Andreu, D., and 3 more authors. (2013). Interventional endocardial motion estimation from electroanatomical mapping data: application to scar characterization. IEEE Trans Biomed Eng, 60(5):1217–1224. DOI: 10.1109/tbme.2012.2230327.

journals Bib

@article{Porras2013a,
  doi = {10.1109/tbme.2012.2230327},
  pages = {1217--1224},
  number = {5},
  volume = {60},
  year = {2013},
  journal = {{IEEE} Trans Biomed Eng},
  title = {Interventional endocardial motion estimation from electroanatomical mapping data: application to scar characterization},
  author = {Porras, A. R. and Piella, G. and Berruezo, A. and Hoogendoorn, C. and Andreu, D. and Fernandez-Armenta, J. and Sitges, M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Sebastian, R., Zimmerman, V., Romero, D., Sanchez-Quintana, D., and Frangi, A. F. (2013). Characterization and modeling of the peripheral cardiac conduction system. IEEE Trans Med Imaging, 32(1):45–55. DOI: 10.1109/tmi.2012.2221474.

journals Bib

@article{Sebastian2013,
  doi = {10.1109/tmi.2012.2221474},
  pages = {45--55},
  number = {1},
  volume = {32},
  year = {2013},
  journal = {{IEEE} Trans Med Imaging},
  title = {Characterization and modeling of the peripheral cardiac conduction system},
  author = {Sebastian, R. and Zimmerman, V. and Romero, D. and Sanchez-Quintana, D. and Frangi, A. F.},
  programmes = {is-modelling},
}

Tobon-Gomez, C., De Craene, M., McLeod, K., Tautz, L., Shi, W., and 20 more authors. (2013). Benchmarking framework for myocardial tracking and deformation algorithms: an open access database. Med Image Anal, 17(6):632–648. DOI: 10.1016/j.media.2013.03.008.

journals Bib

@article{Tobon-Gomez2013,
  doi = {10.1016/j.media.2013.03.008},
  pages = {632--648},
  number = {6},
  volume = {17},
  year = {2013},
  journal = {Med Image Anal},
  title = {Benchmarking framework for myocardial tracking and deformation algorithms: an open access database},
  author = {Tobon-Gomez, C. and {De Craene}, M. and McLeod, K. and Tautz, L. and Shi, W. and Hennemuth, A. and Prakosa, A. and Wang, H. and Carr-White, G. and Kapetanakis, S. and Lutz, A. and Rasche, V. and Schaeffter, T. and Butakoff, C. and Friman, O. and Mansi, T. and Sermesant, M. and Zhuang, X. and Ourselin, S. and Peitgen, H. O. and Pennec, X. and Razavi, R. and Rueckert, D. and Frangi, A. F. and Rhode, K. S.},
  programmes = {cp-realworld, is-trials},
}

Tobon-Gomez, C., Duchateau, N., Sebastian, R., Marchesseau, S., Camara, O., and 17 more authors. (2013). Understanding the mechanisms amenable to CRT response: from pre-operative multimodal image data to patient-specific computational models. Med Biol Eng Comput, 51(11):1235–1250. DOI: 10.1007/s11517-013-1044-7.

journals Bib

@article{Tobon-Gomez2013a,
  doi = {10.1007/s11517-013-1044-7},
  pages = {1235--1250},
  number = {11},
  volume = {51},
  year = {2013},
  journal = {Med Biol Eng Comput},
  title = {Understanding the mechanisms amenable to CRT response: from pre-operative multimodal image data to patient-specific computational models},
  author = {Tobon-Gomez, C. and Duchateau, N. and Sebastian, R. and Marchesseau, S. and Camara, O. and Donal, E. and {De Craene}, M. and Pashaei, A. and Relan, J. and Steghofer, M. and Lamata, P. and Delingette, H. and Duckett, S. and Garreau, M. and Hernandez, A. and Rhode, K. S. and Sermesant, M. and Ayache, N. and Leclercq, C. and Razavi, R. and Smith, N. P. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Weese, J., Groth, A., Nickisch, H., Barschdorf, H., Weber, F. M., and 15 more authors. (2013). Generating anatomical models of the heart and the aorta from medical images for personalized physiological simulations. Med Biol Eng Comput, 51(11):1209–1219. DOI: 10.1007/s11517-012-1027-0.

journals Bib

@article{Weese2013,
  doi = {10.1007/s11517-012-1027-0},
  pages = {1209--1219},
  number = {11},
  volume = {51},
  year = {2013},
  journal = {Med Biol Eng Comput},
  title = {Generating anatomical models of the heart and the aorta from medical images for personalized physiological simulations},
  author = {Weese, J. and Groth, A. and Nickisch, H. and Barschdorf, H. and Weber, F. M. and Velut, J. and Castro, M. and Toumoulin, C. and Coatrieux, J. L. and {De Craene}, M. and Piella, G. and Tobon-Gomez, C. and Frangi, A. F. and Barber, D. C. and Valverde, I. and Shi, Y. and Staicu, C. and Brown, A. and Beerbaum, P. and Hose, D. R.},
  programmes = {cp-realworld, cp-twinning},
}

Whitmarsh, T., Humbert, L., Del Rio Barquero, L. M., Di Gregorio, S., and Frangi, A. F. (2013). 3D reconstruction of the lumbar vertebrae from anteroposterior and lateral dual-energy x-ray absorptiometry. Med Image Anal, 17(4):475–487. DOI: 10.1016/j.media.2013.02.002.

journals Bib

@article{Whitmarsh2013,
  doi = {10.1016/j.media.2013.02.002},
  pages = {475--487},
  number = {4},
  volume = {17},
  year = {2013},
  journal = {Med Image Anal},
  author = {Whitmarsh, T. and Humbert, L. and {Del Rio Barquero}, L. M. and {Di Gregorio}, S. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Humbert, L., Whitmarsh, T., Del Rio Barquero, L., De Craene, M., and Frangi, A. F. (2013). Metodo para Obtener una Reconstruccion Tridimensional a Partir de una o mas Vistas Proyectivas, y uso de la misma. Granted Patent ES 2382774 B1. Spain. Available at: https://lens.org/088-548-851-354-429.

patents

2012

Bernardini, A., Larrabide, I., Petrini, L., Pennati, G., Fiore, E., and 2 more authors. (2012). Deployment of self-expandable stents in aneurysmatic cerebral vessels: comparison of different computational approaches for interventional planning. Comput Methods Biomech Biomed Engin, 15(3):303–311. DOI: 10.1080/10255842.2010.527838.

journals Bib

@article{Bernardini2012,
  doi = {10.1080/10255842.2010.527838},
  pages = {303--311},
  number = {3},
  volume = {15},
  year = {2012},
  journal = {Comput Methods Biomech Biomed Engin},
  title = {Deployment of self-expandable stents in aneurysmatic cerebral vessels: comparison of different computational approaches for interventional planning},
  author = {Bernardini, A. and Larrabide, I. and Petrini, L. and Pennati, G. and Fiore, E. and Kim, M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Bogunovic, H., Pozo, J. M., Cardenes, R., Cruz Villa-Uriol, M., Blanc, R., and 2 more authors. (2012). Automated landmarking and geometric characterization of the carotid siphon. Med Image Anal, 16(4):889–903. DOI: 10.1016/j.media.2012.01.006.

journals Bib

@article{Bogunovic2012,
  doi = {10.1016/j.media.2012.01.006},
  pages = {889--903},
  number = {4},
  volume = {16},
  year = {2012},
  journal = {Med Image Anal},
  title = {Automated landmarking and geometric characterization of the carotid siphon},
  author = {Bogunovic, H. and Pozo, J. M. and Cardenes, R. and Cruz Villa-Uriol, M. and Blanc, R. and Piotin, M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Cerrolaza, J. J., Villanueva, A., Sukno, F. M., Butakoff, C., Frangi, A. F., and 1 more author. (2012). Full multiresolution active shape models. J Math Imaging Vision, 44(3):463–479. DOI: 10.1007/s10851-012-0338-y.

journals Bib

@article{Cerrolaza2012,
  doi = {10.1007/s10851-012-0338-y},
  pages = {463--479},
  number = {3},
  volume = {44},
  year = {2012},
  journal = {J Math Imaging Vision},
  title = {Full multiresolution active shape models},
  author = {Cerrolaza, J. J. and Villanueva, A. and Sukno, F. M. and Butakoff, C. and Frangi, A. F. and Cabeza, R.},
  programmes = {cp-realworld},
}

De Craene, M., Piella, G., Camara, O., Duchateau, N., Silva, E., and 5 more authors. (2012). Temporal diffeomorphic free-form deformation: application to motion and strain estimation from 3D echocardiography. Med Image Anal, 16(2):427–450. DOI: 10.1016/j.media.2011.10.006.

journals Bib

@article{DeCraene2012a,
  doi = {10.1016/j.media.2011.10.006},
  pages = {427--450},
  number = {2},
  volume = {16},
  year = {2012},
  journal = {Med Image Anal},
  title = {Temporal diffeomorphic free-form deformation: application to motion and strain estimation from {{3D}} echocardiography},
  author = {{De Craene}, M. and Piella, G. and Camara, O. and Duchateau, N. and Silva, E. and Doltra, A. and {D'Hooge}, J. and Brugada, J. and Sitges, M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Duchateau, N., Doltra, A., Silva, E., De Craene, Y., Piella, G., and 5 more authors. (2012). Atlas-based quantification of myocardial motion abnormalities: added-value for understanding the effect of cardiac resynchronization therapy. Ultrasound Med Biol, 38(12):2186–2197. DOI: 10.1016/j.ultrasmedbio.2012.08.009.

journals Bib

@article{Duchateau2012,
  doi = {10.1016/j.ultrasmedbio.2012.08.009},
  pages = {2186--2197},
  number = {12},
  volume = {38},
  year = {2012},
  journal = {Ultrasound Med Biol},
  title = {Atlas-based quantification of myocardial motion abnormalities: added-value for understanding the effect of cardiac resynchronization therapy},
  author = {Duchateau, N. and Doltra, A. and Silva, E. and {De Craene}, Y. and Piella, G. and Angeles Castel, M. and Mont, L. and Brugada, J. and Frangi, A. F. and Sitges, M.},
  programmes = {cp-realworld, is-trials},
}

Duchateau, N., De Craene, M., Piella, G., and Frangi, A. F. (2012). Constrained manifold learning for the characterization of pathological deviations from normality. Med Image Anal, 16(8):1532–1549. DOI: 10.1016/j.media.2012.07.003.

journals Bib

@article{Duchateau2012a,
  doi = {10.1016/j.media.2012.07.003},
  pages = {1532--1549},
  number = {8},
  volume = {16},
  year = {2012},
  journal = {Med Image Anal},
  title = {Constrained manifold learning for the characterization of pathological deviations from normality},
  author = {Duchateau, N. and {De Craene}, M. and Piella, G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Duckett, S. G., Camara, O., Ginks, M. R., Bostock, J., Chinchapatnam, P., and 9 more authors. (2012). Relationship between endocardial activation sequences defined by high-density mapping to early septal contraction (septal flash) in patients with left bundle branch block undergoing cardiac resynchronization therapy. Europace, 14(1):99–106. DOI: 10.1093/europace/eur235.

journals Bib

@article{Duckett2012,
  doi = {10.1093/europace/eur235},
  pages = {99--106},
  number = {1},
  volume = {14},
  year = {2012},
  journal = {Europace},
  title = {Relationship between endocardial activation sequences defined by high-density mapping to early septal contraction (septal flash) in patients with left bundle branch block undergoing cardiac resynchronization therapy},
  author = {Duckett, S. G. and Camara, O. and Ginks, M. R. and Bostock, J. and Chinchapatnam, P. and Sermesant, M. and Pashaei, A. and Lambiase, P. D. and Gill, J. S. and Carr-White, G. S. and Frangi, A. F. and Razavi, R. and Bijnens, B. H. and Rinaldi, C. A.},
  programmes = {cp-realworld, is-trials},
}

Humbert, L., Whitmarsh, T., del Rio Barquero, L. M., and Frangi, A. F. (2012). Computing structural parameters from dual-energy x-ray absorptiometry using a 3D reconstruction method. Osteoporos Int, 23:S349–S350.

journals Bib

@article{Humbert2012a,
  pages = {S349--S350},
  volume = {23},
  year = {2012},
  journal = {Osteoporos Int},
  title = {Computing structural parameters from dual-energy x-ray absorptiometry using a {{3D}} reconstruction method},
  author = {Humbert, L. and Whitmarsh, T. and {del Rio Barquero}, L. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Humbert, L., Whitmarsh, T., De Craene, M., del Rio Barquero, L. M., and Frangi, A. F. (2012). Technical note: comparison between single and multiview simulated DXA configurations for reconstructing the 3D shape and bone mineral density distribution of the proximal femur. Med Phys, 39(8):5272–5276. DOI: 10.1118/1.4736540.

journals Bib

@article{Humbert2012b,
  doi = {10.1118/1.4736540},
  pages = {5272--5276},
  number = {8},
  volume = {39},
  year = {2012},
  journal = {Med Phys},
  title = {Technical note: comparison between single and multiview simulated {DXA} configurations for reconstructing the {{3D}} shape and bone mineral density distribution of the proximal femur},
  author = {Humbert, L. and Whitmarsh, T. and {De Craene}, M. and {del Rio Barquero}, L. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Larrabide, I., Kim, M., Augsburger, L., Cruz Villa-Uriol, M., Ruefenacht, D., and 1 more author. (2012). Fast virtual deployment of self-expandable stents: method and in vitro evaluation for intracranial aneurysmal stenting. Med Image Anal, 16(3):721–730. DOI: 10.1016/j.media.2010.04.009.

journals Bib

@article{Larrabide2012,
  doi = {10.1016/j.media.2010.04.009},
  pages = {721--730},
  number = {3},
  volume = {16},
  year = {2012},
  journal = {Med Image Anal},
  title = {Fast virtual deployment of self-expandable stents: method and in vitro evaluation for intracranial aneurysmal stenting},
  author = {Larrabide, I. and Kim, M. and Augsburger, L. and Cruz Villa-Uriol, M. and Ruefenacht, D. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Larrabide, I., Villa-Uriol, M.-C., Cardenes, R., Barbarito, V., Carotenuto, L., and 9 more authors. (2012). Angiolab-a software tool for morphological analysis and endovascular treatment planning of intracranial aneurysms. Comput Methods Programs Biomed, 108(2):806–819. DOI: 10.1016/j.cmpb.2012.05.006.

journals Bib

@article{Larrabide2012a,
  doi = {10.1016/j.cmpb.2012.05.006},
  pages = {806--819},
  number = {2},
  volume = {108},
  year = {2012},
  journal = {Comput Methods Programs Biomed},
  title = {Angiolab-a software tool for morphological analysis and endovascular treatment planning of intracranial aneurysms},
  author = {Larrabide, I. and Villa-Uriol, M.-C. and Cardenes, R. and Barbarito, V. and Carotenuto, L. and Geers, A. J. and Morales, H. G. and Pozo, J. M. and Mazzeo, M. D. and Bogunovic, H. and Omedas, P. and Riccobene, C. and Macho, J. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Oubel, E., De Craene, M., Hero, A. O., Pourmorteza, A., Huguet, M., and 3 more authors. (2012). Cardiac motion estimation by joint alignment of tagged MRI sequences. Med Image Anal, 16(1):339–350. DOI: 10.1016/j.media.2011.09.001.

journals Bib

@article{Oubel2012,
  doi = {10.1016/j.media.2011.09.001},
  pages = {339--350},
  number = {1},
  volume = {16},
  year = {2012},
  journal = {Med Image Anal},
  title = {Cardiac motion estimation by joint alignment of tagged {MRI} sequences},
  author = {Oubel, E. and {De Craene}, M. and Hero, A. O. and Pourmorteza, A. and Huguet, M. and Avegliano, G. and Bijnens, B. H. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Pavani, S.-K., Sukno, F. M., Delgado-Gomez, D., Butakoff, C., Planes, X., and 1 more author. (2012). An experimental evaluation of three classifiers for use in self-updating face recognition systems. IEEE Trans Inf Forensics Security, 7(3):932–943. DOI: 10.1109/tifs.2012.2186292.

journals Bib

@article{Pavani2012,
  doi = {10.1109/tifs.2012.2186292},
  pages = {932--943},
  number = {3},
  volume = {7},
  year = {2012},
  journal = {{IEEE} Trans Inf Forensics Security},
  title = {An experimental evaluation of three classifiers for use in self-updating face recognition systems},
  author = {Pavani, S.-K. and Sukno, F. M. and Delgado-Gomez, D. and Butakoff, C. and Planes, X. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Tobon-Gomez, C., Sukno, F. M., Butakoff, C., Huguet, M., and Frangi, A. F. (2012). Automatic training and reliability estimation for 3D ASM applied to cardiac MRI segmentation. Phys Med Biol, 57(13):4155–4174. DOI: 10.1088/0031-9155/57/13/4155.

journals Bib

@article{Tobon-Gomez2012,
  doi = {10.1088/0031-9155/57/13/4155},
  pages = {4155--4174},
  number = {13},
  volume = {57},
  year = {2012},
  journal = {Phys Med Biol},
  title = {Automatic training and reliability estimation for {{3D}} ASM applied to cardiac {MRI} segmentation},
  author = {Tobon-Gomez, C. and Sukno, F. M. and Butakoff, C. and Huguet, M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Whitmarsh, T., Fritscher, K. D., Humbert, L., del Rio Barquero, L. M., Roth, T., and 4 more authors. (2012). Hip fracture discrimination from dual-energy x-ray absorptiometry by statistical model registration. Bone, 51(5):896–901. DOI: 10.1016/j.bone.2012.08.114.

journals Bib

@article{Whitmarsh2012,
  doi = {10.1016/j.bone.2012.08.114},
  pages = {896--901},
  number = {5},
  volume = {51},
  year = {2012},
  journal = {Bone},
  title = {Hip fracture discrimination from dual-energy x-ray absorptiometry by statistical model registration},
  author = {Whitmarsh, T. and Fritscher, K. D. and Humbert, L. and {del Rio Barquero}, L. M. and Roth, T. and Kammerlander, C. and Blauth, M. and Schubert, R. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Hunter, P. J., Bradley, C., Britten, R., Brooks, D., Carotenuto, L., and 12 more authors. (2012). The VPH-Physiome Project: standards, tools and databases for multi-scale physiological modelling. In Ambrosi, D., Quarteroni, A., and Rozza, G. (Eds.). Modelling Physiological Flows. (pp. 205–250). Springer.

chapters Bib

@inbook{Hunter2012,
  doi = {10.1007/978-88-470-1935-5_8},
  editor = {Ambrosi, D. and Quarteroni, A. and Rozza, G.},
  pages = {205--250},
  publisher = {Springer},
  booktitle = {Modelling Physiological Flows},
  year = {2012},
  title = {The VPH-Physiome Project: standards, tools and databases for multi-scale physiological modelling},
  author = {Hunter, P. J. and Bradley, C. and Britten, R. and Brooks, D. and Carotenuto, L. and Christie, R. and Frangi, A. F. and Garny, A. and Ladd, D. and Little, C. and Nickerson, D. and Nielsen, P. and Miller, A. and Planes, X. and Steghoffer, M. and Young, A. A. and Yu, T.},
  programmes = {is-ecosystems, is-modelling},
}

Humbert, L., Whitmarsh, T., Del Rio Barquero, L., De Craene, M., and Frangi, A. F. (2012). Method for Obtaining a Three-dimensional Reconstruction from One or More Projective Views and Use Thereof. Patent Application WO 2011/098895 A8. World Intellectual Property Organization. Available at: https://lens.org/093-001-489-209-561.

patents
Humbert, L., Whitmarsh, T., Del Rio Barquero, L., De Craene, M., and Frangi, A. F. (2012). Method for Obtaining a Three-dimensional Reconstruction from One or More Projective Views and Use Thereof. Patent Application EP 2534641 A2. European Patent Office. Available at: https://lens.org/031-317-640-459-582.

patents
Humbert, L., Whitmarsh, T., Del Rio Barquero, L., De Craene, M., and Frangi, A. F. (2012). Metodo para Obtener una Reconstruccion Tridimensional a Partir de una o mas Vistas Proyectivas, y uso de la misma. Patent Application ES 2382774 A1. Spain. Available at: https://lens.org/108-942-953-738-684.

patents
Duchateau, N. (2012). Statistical Atlases of Motion and Deformation for the Characterization of Crt Responders. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and De Craene, M.

Cum Laude.

theses
Bogunovic, H. (2012). Geometric Modeling and Characterization of the Circle of Willis. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and Pozo, J. M.

Cum Laude.

theses
Morales, H. G. (2012). Endovascular Coiling and Its Influence on Intra-aneurysmal Hemodynamics by Image-based. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and Larrabide, I.

Cum Laude.

theses
Whitmarsh, T. (2012). 3D Reconstruction of the Proximal Femur and Lumbar Vertebrae from Dual-energy X-ray Absorptiometry for Osteoporotic Fracture Risk Assessment. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and Humbert, L.

Cum Laude.

theses

2011

Avegliano, G., Huguet, M., Costabel, J. P., Ronderos, R., Bijnens, B., and 5 more authors. (2011). Morphologic pattern of late gadolinium enhancement in takotsubo cardiomyopathy detected by early cardiovascular magnetic resonance. Clin Cardiol, 34(3):178–182. DOI: 10.1002/clc.20877.

journals Bib

@article{Avegliano2011,
  doi = {10.1002/clc.20877},
  pages = {178--182},
  number = {3},
  volume = {34},
  year = {2011},
  journal = {Clin Cardiol},
  title = {Morphologic pattern of late gadolinium enhancement in takotsubo cardiomyopathy detected by early cardiovascular magnetic resonance},
  author = {Avegliano, G. and Huguet, M. and Costabel, J. P. and Ronderos, R. and Bijnens, B. and Kuschnir, P. and Thierer, J. and Tobon-Gomez, C. and Oller Martinez, G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Avegliano, G. P., Huguet, M., Costabel, J. P., Kuschnir, P., Thierer, J., and 5 more authors. (2011). Utilidad de la resonancia magnética cardı́aca en la valoración de los pacientes con dolor torácico, troponinas elevadas y ausencia de obstrucción arterial coronaria. Rev Argent Cardiol, 79(3):226–230.

journals Bib

@article{Avegliano2011a,
  pages = {226--230},
  number = {3},
  volume = {79},
  year = {2011},
  journal = {Rev Argent Cardiol},
  title = {Utilidad de la resonancia magn\'{e}tica card\'{\i}aca en la valoraci\'{o}n de los pacientes con dolor tor\'{a}cico, troponinas elevadas y ausencia de obstrucci\'{o}n arterial coronaria},
  author = {Avegliano, G. P. and Huguet, M. and Costabel, J. P. and Kuschnir, P. and Thierer, J. and {Alves de Lima}, A. and Sanchez, G. and Petit, M. and Frangi, A. F. and Ronderos, R.},
  programmes = {cp-realworld},
}

Bernardini, A., Larrabide, I., Morales, H. G., Pennati, G., Petrini, L., and 2 more authors. (2011). Influence of different computational approaches for stent deployment on cerebral aneurysm haemodynamics. Interface Focus, 1(3):338–348. DOI: 10.1098/rsfs.2011.0004.

journals Bib

@article{Bernardini2011,
  doi = {10.1098/rsfs.2011.0004},
  pages = {338--348},
  number = {3},
  volume = {1},
  year = {2011},
  journal = {Interface Focus},
  title = {Influence of different computational approaches for stent deployment on cerebral aneurysm haemodynamics},
  author = {Bernardini, A. and Larrabide, I. and Morales, H. G. and Pennati, G. and Petrini, L. and Cito, S. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Bogunovic, H., Pozo, J. M., Villa-Uriol, M. C., Majoie, C. B. L. M., van den Berg, R., and 5 more authors. (2011). Automated segmentation of cerebral vasculature with aneurysms in 3DRA and tof-mra using geodesic active regions: an evaluation study. Med Phys, 38(1):210–222. DOI: 10.1118/1.3515749.

journals Bib

@article{Bogunovic2011a,
  doi = {10.1118/1.3515749},
  pages = {210--222},
  number = {1},
  volume = {38},
  year = {2011},
  journal = {Med Phys},
  title = {Automated segmentation of cerebral vasculature with aneurysms in {3D}RA and tof-mra using geodesic active regions: an evaluation study},
  author = {Bogunovic, H. and Pozo, J. M. and Villa-Uriol, M. C. and Majoie, C. B. L. M. and {van den Berg}, R. and {van Andel}, H. A. and Macho, J. M. and Blasco, J. and {San Roman}, L. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Bradley, C., Bowery, A., Britten, R., Budelmann, V., Camara, O., and 26 more authors. (2011). OpenCMISS: a multi-physics & multi-scale computational infrastructure for the vph/physiome project. Prog Biophys Mol Biol, 107(1):32–47. DOI: 10.1016/j.pbiomolbio.2011.06.015.

journals Bib

@article{Bradley2011,
  doi = {10.1016/j.pbiomolbio.2011.06.015},
  pages = {32--47},
  number = {1},
  volume = {107},
  year = {2011},
  journal = {Prog Biophys Mol Biol},
  title = {Open{CMISS}: a multi-physics \& multi-scale computational infrastructure for the vph/physiome project},
  author = {Bradley, C. and Bowery, A. and Britten, R. and Budelmann, V. and Camara, O. and Christie, R. and Cookson, A. and Frangi, A. F. and Gamage, T. B. and Heidlauf, T. and Krittian, S. and Ladd, D. and Little, C. and Mithraratne, K. and Nash, M. and Nickerson, D. and Nielsen, P. and Nordbo, O. and Omholt, S. and Pashaei, A. and Paterson, D. and Rajagopal, V. and Reeve, A. and Roehrle, O. and Safaei, S. and Sebastian, R. and Steghoefer, M. and Wu, T. and Yu, T. and Zhang, H. and Hunter, P. J.},
  programmes = {is-modelling, is-ecosystems},
}

Camara, O., Sermesant, M., Lamata, P., Wang, L., Pop, M., and 16 more authors. (2011). Inter-model consistency and complementarity: learning from ex-vivo imaging and electrophysiological data towards an integrated understanding of cardiac physiology. Prog Biophys Mol Biol, 107(1):122–133. DOI: 10.1016/j.pbiomolbio.2011.07.007.

journals Bib

@article{Camara2011,
  doi = {10.1016/j.pbiomolbio.2011.07.007},
  pages = {122--133},
  number = {1},
  volume = {107},
  year = {2011},
  journal = {Prog Biophys Mol Biol},
  title = {Inter-model consistency and complementarity: learning from ex-vivo imaging and electrophysiological data towards an integrated understanding of cardiac physiology},
  author = {Camara, O. and Sermesant, M. and Lamata, P. and Wang, L. and Pop, M. and Relan, J. and {De Craene}, M. and Delingette, H. and Liu, H. and Niederer, S. and Pashaei, A. and Plank, G. and Romero, D. and Sebastian, R. and Wong, K. C. L. and Zhang, H. and Ayache, N. and Frangi, A. F. and Shi, P. and Smith, N. P. and Wright, G. A.},
  programmes = {is-modelling},
}

Cardenes, R., Pozo, J. M., Bogunovic, H., Larrabide, I., and Frangi, A. F. (2011). Automatic aneurysm neck detection using surface Voronoi diagrams. IEEE Trans Med Imaging, 30(10):1863–76. DOI: 10.1109/tmi.2011.2157698.

journals Bib

@article{Cardenes2011a,
  doi = {10.1109/tmi.2011.2157698},
  pages = {1863--76},
  number = {10},
  volume = {30},
  year = {2011},
  journal = {{IEEE} Trans Med Imaging},
  title = {Automatic aneurysm neck detection using surface Voronoi diagrams},
  author = {Cardenes, R. and Pozo, J. M. and Bogunovic, H. and Larrabide, I. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Coatrieux, J.-L., Frangi, A. F., Peng, G. C. Y., D’Argenio, D. Z., Marmarelis, V. Z., and 1 more author. (2011). Special issue on Multiscale modeling and analysis in computational biology and medicine - Part 2. IEEE Trans Biomed Eng, 58(12):3434–3439.

journals Bib

@article{Coatrieux2011,
  pages = {3434--3439},
  number = {12},
  volume = {58},
  year = {2011},
  journal = {{IEEE} Trans Biomed Eng},
  title = {Special issue on {M}ultiscale modeling and analysis in computational biology and medicine - {Part 2}},
  author = {Coatrieux, J.-L. and Frangi, A. F. and Peng, G. C. Y. and D'Argenio, D. Z. and Marmarelis, V. Z. and Michailova, A.},
  programmes = {is-modelling},
}

Costalat, V., Sanchez, M., Ambard, D., Thines, L., Lonjon, N., and 17 more authors. (2011). Biomechanical wall properties of human intracranial aneurysms resected following surgical clipping (irras project). J Biomech, 44(15):2685–2691. DOI: 10.1016/j.jbiomech.2011.07.026.

journals Bib

@article{Costalat2011,
  doi = {10.1016/j.jbiomech.2011.07.026},
  pages = {2685--2691},
  number = {15},
  volume = {44},
  year = {2011},
  journal = {J Biomech},
  title = {Biomechanical wall properties of human intracranial aneurysms resected following surgical clipping (irras project)},
  author = {Costalat, V. and Sanchez, M. and Ambard, D. and Thines, L. and Lonjon, N. and Nicoud, F. and Brunel, H. and Lejeune, J. P. and Dufour, H. and Bouillot, P. and Lhaldky, J. P. and Kouri, K. and Segnarbieux, F. and Maurage, C. A. and Lobotesis, K. and Villa-Uriol, M. C. and Zhang, C. and Frangi, A. F. and Mercier, G. and Bonafe, A. and Sarry, L. and Jourdan, F.},
  programmes = {is-modelling},
}

Duchateau, N., De Craene, M., Piella, G., Silva, E., Doltra, A., and 3 more authors. (2011). A spatiotemporal statistical atlas of motion for the quantification of abnormal myocardial tissue velocities. Med Image Anal, 15(3):316–328. DOI: 10.1016/j.media.2010.12.006.

journals Bib

@article{Duchateau2011,
  doi = {10.1016/j.media.2010.12.006},
  pages = {316--328},
  number = {3},
  volume = {15},
  year = {2011},
  journal = {Med Image Anal},
  title = {A spatiotemporal statistical atlas of motion for the quantification of abnormal myocardial tissue velocities},
  author = {Duchateau, N. and {De Craene}, M. and Piella, G. and Silva, E. and Doltra, A. and Sitges, M. and Bijnens, B. H. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Frangi, A. F., Coatrieux, J.-L., Peng, G. C. Y., D’Argenio, D. Z., Marmarelis, V. Z., and 1 more author. (2011). Special issue on Multiscale modeling and analysis in computational biology and medicine - Part 1. IEEE Trans Biomed Eng, 58(10):2936–2942. DOI: 10.1109/tbme.2011.2165151.

journals Bib

@article{Frangi2011,
  doi = {10.1109/tbme.2011.2165151},
  pages = {2936--2942},
  number = {10},
  volume = {58},
  year = {2011},
  journal = {{IEEE} Trans Biomed Eng},
  title = {Special issue on {M}ultiscale modeling and analysis in computational biology and medicine - {Part 1}},
  author = {Frangi, A. F. and Coatrieux, J.-L. and Peng, G. C. Y. and D'Argenio, D. Z. and Marmarelis, V. Z. and Michailova, A.},
  programmes = {is-modelling},
}

Geers, A. J., Larrabide, I., Radaelli, A. G., Bogunovic, H., Kim, M., and 4 more authors. (2011). Patient-specific computational hemodynamics of intracranial aneurysms from 3D rotational angiography and CT angiography: an in vivo reproducibility study. Am J Neuroradiol, 32(3):581–586. DOI: 10.3174/ajnr.a2306.

journals Bib

@article{Geers2011,
  doi = {10.3174/ajnr.a2306},
  pages = {581--586},
  number = {3},
  volume = {32},
  year = {2011},
  journal = {Am J Neuroradiol},
  title = {Patient-specific computational hemodynamics of intracranial aneurysms from {3D} rotational angiography and {CT} angiography: an in vivo reproducibility study},
  author = {Geers, A. J. and Larrabide, I. and Radaelli, A. G. and Bogunovic, H. and Kim, M. and van Andel, H. A. F. G. and Majoie, C. B. and VanBavel, E. and Frangi, A. F.},
  programmes = {is-modelling},
}

Larrabide, I., Cruz Villa-Uriol, M., Cardenes, R., Pozo, J. M., Macho, J., and 6 more authors. (2011). Three-dimensional morphological analysis of intracranial aneurysms: a fully automated method for aneurysm sac isolation and quantification. Med Phys, 38(5):2439–2449. DOI: 10.1118/1.3575417.

journals Bib

@article{Larrabide2011,
  doi = {10.1118/1.3575417},
  pages = {2439--2449},
  number = {5},
  volume = {38},
  year = {2011},
  journal = {Med Phys},
  title = {Three-dimensional morphological analysis of intracranial aneurysms: a fully automated method for aneurysm sac isolation and quantification},
  author = {Larrabide, I. and Cruz Villa-Uriol, M. and Cardenes, R. and Pozo, J. M. and Macho, J. and San Roman, L. and Blasco, J. and Vivas, E. and Marzo, A. and Hose, D. R. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Marzo, A., Singh, P., Larrabide, I., Radaelli, A., Coley, S., and 7 more authors. (2011). Computational hemodynamics in cerebral aneurysms: the effects of modeled versus measured boundary conditions. Ann Biomed Eng, 39(2):884–896. DOI: 10.1007/s10439-010-0187-z.

journals Bib

@article{Marzo2011,
  doi = {10.1007/s10439-010-0187-z},
  pages = {884--896},
  number = {2},
  volume = {39},
  year = {2011},
  journal = {Ann Biomed Eng},
  title = {Computational hemodynamics in cerebral aneurysms: the effects of modeled versus measured boundary conditions},
  author = {Marzo, A. and Singh, P. and Larrabide, I. and Radaelli, A. and Coley, S. and Gwilliam, M. and Wilkinson, I. D. and Lawford, P. and Reymond, P. and Patel, U. and Frangi, A. F. and Hose, D. R.},
  programmes = {is-modelling},
}

Morales, H. G., Kim, M., Vivas, E. E., Villa-Uriol, M. C., Larrabide, I., and 3 more authors. (2011). How do coil configuration and packing density influence intra-aneurysmal hemodynamics?. Am J Neuroradiol, 32(10):1935–1941. DOI: 10.3174/ajnr.a2635.

journals Bib

@article{Morales2011,
  doi = {10.3174/ajnr.a2635},
  pages = {1935--1941},
  number = {10},
  volume = {32},
  year = {2011},
  journal = {Am J Neuroradiol},
  title = {How do coil configuration and packing density influence intra-aneurysmal hemodynamics?},
  author = {Morales, H. G. and Kim, M. and Vivas, E. E. and Villa-Uriol, M. C. and Larrabide, I. and Sola, T. and Guimaraens, L. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Pashaei, A., Romero, D., Sebastian, R., Camara, O., and Frangi, A. F. (2011). Fast multiscale modeling of cardiac electrophysiology including Purkinje system. IEEE Trans Biomed Eng, 58(10):2956–2960. DOI: 10.1109/tbme.2011.2162841.

journals Bib

@article{Pashaei2011a,
  doi = {10.1109/tbme.2011.2162841},
  pages = {2956--2960},
  number = {10},
  volume = {58},
  year = {2011},
  journal = {{IEEE} Trans Biomed Eng},
  title = {Fast multiscale modeling of cardiac electrophysiology including Purkinje system},
  author = {Pashaei, A. and Romero, D. and Sebastian, R. and Camara, O. and Frangi, A. F.},
  programmes = {is-modelling},
}

Pozo, J. M., Villa-Uriol, M.-C., and Frangi, A. F. (2011). Efficient 3D geometric and Zernike moments computation from unstructured surface meshes. IEEE Trans Pattern Anal Mach Intell, 33(3):471–484. DOI: 10.1109/tpami.2010.139.

journals Bib

@article{Pozo2011,
  doi = {10.1109/tpami.2010.139},
  pages = {471--484},
  number = {3},
  volume = {33},
  year = {2011},
  journal = {{IEEE} Trans Pattern Anal Mach Intell},
  title = {Efficient {{3D}} geometric and Zernike moments computation from unstructured surface meshes},
  author = {Pozo, J. M. and Villa-Uriol, M.-C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Sebastian, R., Zimmerman, V., Romero, D., and Frangi, A. F. (2011). Construction of a computational anatomical model of the peripheral cardiac conduction system. IEEE Trans Biomed Eng, 58(12):3479–3482. DOI: 10.1109/tbme.2011.2166553.

journals Bib

@article{Sebastian2011,
  doi = {10.1109/tbme.2011.2166553},
  pages = {3479--3482},
  number = {12},
  volume = {58},
  year = {2011},
  journal = {{IEEE} Trans Biomed Eng},
  title = {Construction of a computational anatomical model of the peripheral cardiac conduction system},
  author = {Sebastian, R. and Zimmerman, V. and Romero, D. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Smith, N., Vecchi, A., McCormick, M., Nordsletten, D., Camara, O., and 18 more authors. (2011). euHeart: personalized and integrated cardiac care using patient-specific cardiovascular modelling. Interface Focus, 1(3):349–364. DOI: 10.1098/rsfs.2010.0048.

journals Bib

@article{Smith2011,
  doi = {10.1098/rsfs.2010.0048},
  pages = {349--364},
  number = {3},
  volume = {1},
  year = {2011},
  journal = {Interface Focus},
  title = {eu{H}eart: personalized and integrated cardiac care using patient-specific cardiovascular modelling},
  author = {Smith, N. and de Vecchi, A. and McCormick, M. and Nordsletten, D. and Camara, O. and Frangi, A. F. and Delingette, H. and Sermesant, M. and Relan, J. and Ayache, N. and Krueger, M. W. and Schulze, W. H. W. and Hose, R. and Valverde, {I.} and Beerbaum, P. and Staicu, C. and Siebes, M. and Spaan, J. and Hunter, P. and Weese, J. and Lehmann, H. and Chapelle, D. and Rezavi, R.},
  programmes = {is-modelling},
}

Suinesiaputra, A., Frangi, A. F., Kaandorp, T. A. M., Lamb, H. J., Bax, J. J., and 2 more authors. (2011). Automated regional wall motion abnormality detection by combining rest and stress cardiac MRI: correlation with contrast-enhanced MRI. J Magn Reson Imaging, 34(2):270–278. DOI: 10.1002/jmri.22601.

journals Bib

@article{Suinesiaputra2011a,
  doi = {10.1002/jmri.22601},
  pages = {270--278},
  number = {2},
  volume = {34},
  year = {2011},
  journal = {J Magn Reson Imaging},
  title = {Automated regional wall motion abnormality detection by combining rest and stress cardiac {MRI}: correlation with contrast-enhanced {MRI}},
  author = {Suinesiaputra, A. and Frangi, A. F. and Kaandorp, T. A. M. and Lamb, H. J. and Bax, J. J. and Reiber, J. H. C. and Lelieveldt, B. P. F.},
  programmes = {cp-realworld},
}

Tobon-Gomez, C., Sukno, F. M., Bijnens, B. H., Huguet, M., and Frangi, A. F. (2011). Realistic simulation of cardiac magnetic resonance studies modeling anatomical variability, trabeculae, and papillary muscles. Magn Reson Med, 65(1):280–288.

journals Bib

@article{Tobon-Gomez2011,
  pages = {280--288},
  number = {1},
  volume = {65},
  year = {2011},
  journal = {Magn Reson Med},
  title = {Realistic simulation of cardiac magnetic resonance studies modeling anatomical variability, trabeculae, and papillary muscles},
  author = {Tobon-Gomez, C. and Sukno, F. M. and Bijnens, B. H. and Huguet, M. and Frangi, A. F.},
  programmes = {cp-twinning},
}

Villa-Uriol, M. C., Berti, G., Hose, D. R., Marzo, A., Chiarini, A., and 7 more authors. (2011). @neurIST complex information processing toolchain for the integrated management of cerebral aneurysms. Interface Focus, 1(3):308–319. DOI: 10.1098/rsfs.2010.0033.

journals Bib

@article{Villa-Uriol2011,
  doi = {10.1098/rsfs.2010.0033},
  pages = {308--319},
  number = {3},
  volume = {1},
  year = {2011},
  journal = {Interface Focus},
  title = {{@neurIST} complex information processing toolchain for the integrated management of cerebral aneurysms},
  author = {Villa-Uriol, M. C. and Berti, G. and Hose, D. R. and Marzo, A. and Chiarini, A. and Penrose, J. and Pozo, J. and Schmidt, J. G. and Singh, P. and Lycett, R. and Larrabide, I. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Whitmarsh, T., Humbert, L., De Craene, M., del Rio Barquero, L. M., and Frangi, A. F. (2011). Reconstructing the 3D shape and bone mineral density distribution of the proximal femur from dual-energy x-ray absorptiometry. IEEE Trans Med Imaging, 30(12):2101–2114. DOI: 10.1109/tmi.2011.2163074.

journals Bib

@article{Whitmarsh2011a,
  doi = {10.1109/tmi.2011.2163074},
  pages = {2101--2114},
  number = {12},
  volume = {30},
  year = {2011},
  journal = {{IEEE} Trans Med Imaging},
  title = {Reconstructing the {{3D}} shape and bone mineral density distribution of the proximal femur from dual-energy x-ray absorptiometry},
  author = {Whitmarsh, T. and Humbert, L. and {De Craene}, M. and {del Rio Barquero}, L. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Zhang, C., Villa-Uriol, M.-C., De Craene, M., Pozo, J. M., Macho, J. M., and 1 more author. (2011). Dynamic estimation of three-dimensional cerebrovascular deformation from rotational angiography. Med Phys, 38(3):1294–1306. DOI: 10.1118/1.3549761.

journals Bib

@article{Zhang2011,
  doi = {10.1118/1.3549761},
  pages = {1294--1306},
  number = {3},
  volume = {38},
  year = {2011},
  journal = {Med Phys},
  title = {Dynamic estimation of three-dimensional cerebrovascular deformation from rotational angiography},
  author = {Zhang, C. and Villa-Uriol, M.-C. and {De Craene}, M. and Pozo, J. M. and Macho, J. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Humbert, L., Whitmarsh, T., Del Rio Barquero, L., De Craene, M., and Frangi, A. F. (2011). Method for Obtaining a Three-dimensional Reconstruction from One or More Projective Views and Use Thereof. Patent Application WO 2011/098895 A2. World Intellectual Property Organization. Available at: https://lens.org/118-958-078-427-819.

patents
Humbert, L., Whitmarsh, T., Del Rio Barquero, L., De Craene, M., and Frangi, A. F. (2011). Method for Obtaining a Three-dimensional Reconstruction from One or More Projective Views and Use Thereof. Search report WO 2011/098895 A3. World Intellectual Property Organization. Available at: https://lens.org/101-601-983-252-554.

patents

Frangi, A. F. (2011). DISCIPULUS Project – Digital Patient: Interview. University of Sheffield. Available at: http://tinyurl.com/jrnx9tx.

Video.

outreach Bib

@online{Discipulus,
  note = {Video},
  url = {http://tinyurl.com/jrnx9tx},
  publisher = {University of Sheffield},
  year = {2011},
  title = {DISCIPULUS Project -- Digital Patient: Interview},
  author = {Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning, is-ecosystems},
}

Frangi, A. F. (2011). CISTIB YouTube Channel. CISTIB. Available at: https://www.youtube.com/user/CISTIB.

Video.

outreach Bib

@online{CISTIB_YouTube,
  note = {Video},
  url = {https://www.youtube.com/user/CISTIB},
  publisher = {CISTIB},
  year = {2011},
  title = {CISTIB YouTube Channel},
  author = {Frangi, A. F.},
  programmes = {is-ecosystems},
}

Tobon-Gomez, C. (2011). Three-dimensional Statistical Shape Models for Cardiac Image Analysis. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F.

Cum Laude.

theses
Zhang, C. (2011). Recovery of Cerebrovascular Morphodynamics from Time-resolved Rotational Angiography. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and Villa-Uriol, M. C.

Cum Laude.

theses

2010

Balocco, S., Camara, O., Vivas, E., Sola, T., Guimaraens, L., and 5 more authors. (2010). Feasibility of estimating regional mechanical properties of cerebral aneurysms in vivo. Med Phys, 37(4):1689–1706. DOI: 10.1118/1.3355933.

journals Bib

@article{Balocco2010,
  doi = {10.1118/1.3355933},
  pages = {1689--1706},
  number = {4},
  volume = {37},
  year = {2010},
  journal = {Med Phys},
  title = {Feasibility of estimating regional mechanical properties of cerebral aneurysms in vivo},
  author = {Balocco, S. and Camara, O. and Vivas, E. and Sola, T. and Guimaraens, L. and van Andel, H. A. and Majoie, C. B. and Pozo, J. M. and Bijnens, B. H. and Frangi, A. F.},
  programmes = {is-modelling},
}

Balocco, S., Basset, O., Courbebaisse, G., Boni, E., Frangi, A. F., and 2 more authors. (2010). Estimation of the viscoelastic properties of vessel walls using a computational model and Doppler ultrasound. Phys Med Biol, 55(12):3557–3575. DOI: 10.1088/0031-9155/55/12/019.

journals Bib

@article{Balocco2010a,
  doi = {10.1088/0031-9155/55/12/019},
  pages = {3557--3575},
  number = {12},
  volume = {55},
  year = {2010},
  journal = {Phys Med Biol},
  title = {Estimation of the viscoelastic properties of vessel walls using a computational model and {Doppler} ultrasound},
  author = {Balocco, S. and Basset, O. and Courbebaisse, G. and Boni, E. and Frangi, A. F. and Tortoli, P. and Cachard, C.},
  programmes = {cp-realworld, cp-twinning},
}

Benkner, S., Arbona, A., Berti, G., Chiarini, A., Dunlop, R., and 16 more authors. (2010). @neurIST: infrastructure for advanced disease management through integration of heterogeneous data, computing, and complex processing services. IEEE Trans Inf Technol Biomed, 14(6):1365–1377. DOI: 10.1109/titb.2010.2049268.

journals Bib

@article{Benkner2010a,
  doi = {10.1109/titb.2010.2049268},
  pages = {1365--1377},
  number = {6},
  volume = {14},
  year = {2010},
  journal = {IEEE Trans Inf Technol Biomed},
  title = {{@neurIST}: infrastructure for advanced disease management through integration of heterogeneous data, computing, and complex processing services},
  author = {Benkner, S. and Arbona, A. and Berti, G. and Chiarini, A. and Dunlop, R. and Engelbrecht, G. and Frangi, A. F. and Friedrich, C. M. and Hanser, S. and Hasselmeyer, P. and Hose, R. D. and Iavindrasana, J. and Koehler, M. and Lo Iacono, L. and Lonsdale, G. and Meyer, R. and Moore, B. and Rajasekaran, H. and Summers, P. E. and Woehrer, A. and Wood, S.},
  programmes = {cp-realworld, cp-twinning, is-ecosystems},
}

Butakoff, C., and Frangi, A. F. (2010). Multi-view face segmentation using fusion of statistical shape and appearance models. Comput Vis Image Underst, 114(3):311–321. DOI: 10.1016/j.cviu.2009.11.001.

journals Bib

@article{Butakoff2010,
  doi = {10.1016/j.cviu.2009.11.001},
  pages = {311--321},
  number = {3},
  volume = {114},
  year = {2010},
  journal = {Comput Vis Image Underst},
  title = {Multi-view face segmentation using fusion of statistical shape and appearance models},
  author = {Butakoff, C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Duchateau, N., De Craene, M., Piella, G., Silva, E., Doltra, A., and 3 more authors. (2010). Quantification of septal motion abnormalities in CRT candidates using a statistical atlas based-approach. Eur Heart J, 31:875–876.

journals Bib

@article{Duchateau2010a,
  pages = {875--876},
  volume = {31},
  year = {2010},
  journal = {Eur Heart J},
  title = {Quantification of septal motion abnormalities in CRT candidates using a statistical atlas based-approach},
  author = {Duchateau, N. and {De Craene}, M. and Piella, G. and Silva, E. and Doltra, A. and Sitges, M. and Bijnens, B. H. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning},
}

Gianni, D., McKeever, S., Yu, T., Britten, R., Delingette, H., and 3 more authors. (2010). Sharing and reusing cardiovascular anatomical models over the web: a step towards the implementation of the virtual physiological human project. Philos Trans A Math Phys Eng Sci, 368(1921):3039–3056. DOI: 10.1098/rsta.2010.0025.

journals Bib

@article{Gianni2010,
  doi = {10.1098/rsta.2010.0025},
  pages = {3039--3056},
  number = {1921},
  volume = {368},
  year = {2010},
  journal = {Philos Trans A Math Phys Eng Sci},
  title = {Sharing and reusing cardiovascular anatomical models over the web: a step towards the implementation of the virtual physiological human project},
  author = {Gianni, D. and McKeever, S. and Yu, T. and Britten, R. and Delingette, H. and Frangi, A. F. and Hunter, P. and Smith, N.},
  programmes = {cp-realworld, cp-twinning},
}

Hunter, P., Coveney, P. V., Bono, B., Diaz, V., Fenner, J., and 16 more authors. (2010). A vision and strategy for the virtual physiological human in 2010 and beyond. Philos Trans A Math Phys Eng Sci, 368(1920):2595–2614. DOI: 10.1098/rsta.2010.0048.

journals Bib

@article{Hunter2010,
  doi = {10.1098/rsta.2010.0048},
  pages = {2595--2614},
  number = {1920},
  volume = {368},
  year = {2010},
  journal = {Philos Trans A Math Phys Eng Sci},
  title = {A vision and strategy for the virtual physiological human in 2010 and beyond},
  author = {Hunter, P. and Coveney, P. V. and de Bono, B. and Diaz, V. and Fenner, J. and Frangi, A. F. and Harris, P. and Hose, R. and Kohl, P. and Lawford, P. and McCormack, K. and Mendes, M. and Omholt, S. and Quarteroni, A. and Skar, J. and Tegner, J. and Thomas, S. R. and Tollis, I. and Tsamardinos, I. and van Beek, J. H. G. M. and Viceconti, M.},
  programmes = {cp-twinning},
}

Ortega-Garcia, J., Fierrez, J., Alonso-Fernandez, F., Galbally, J., Freire, M. R., and 27 more authors. (2010). The multiscenario multienvironment biosecure multimodal database (BMDB). IEEE Trans Pattern Anal Mach Intell, 32(6):1097–1111. DOI: 10.1109/tpami.2009.76.

journals Bib

@article{Ortega-Garcia2010,
  doi = {10.1109/tpami.2009.76},
  pages = {1097--1111},
  number = {6},
  volume = {32},
  year = {2010},
  journal = {{IEEE} Trans Pattern Anal Mach Intell},
  title = {The multiscenario multienvironment biosecure multimodal database (BMDB)},
  author = {Ortega-Garcia, J. and Fierrez, J. and Alonso-Fernandez, F. and Galbally, J. and Freire, M. R. and Gonzalez-Rodriguez, J. and Garcia-Mateo, C. and Alba-Castro, J.-L. and Gonzalez-Agulla, E. and Otero-Muras, E. and Garcia-Salicetti, S. and Allano, L. and Ly-Van, B. and Dorizzi, B. and Kittler, J. and Bourlai, T. and Poh, N. and Deravi, F. and Ng, M. W. R. and Fairhurst, M. and Hennebert, J. and Humm, A. and Tistarelli, M. and Brodo, L. and Richiardi, J. and Drygajlo, A. and Ganster, H. and Sukno, F. M. and Pavani, S.-K. and Frangi, A. F. and Akarun, L. and Savran, A.},
  programmes = {cp-realworld},
}

Oubel, E., Cebral, J. R., De Craene, M., Blanc, R., Blasco, J., and 3 more authors. (2010). Wall motion estimation in intracranial aneurysms. Physiol Meas, 31(9):1119–1135. DOI: 10.1088/0967-3334/31/9/004.

journals Bib

@article{Oubel2010,
  doi = {10.1088/0967-3334/31/9/004},
  pages = {1119--1135},
  number = {9},
  volume = {31},
  year = {2010},
  journal = {Physiol Meas},
  title = {Wall motion estimation in intracranial aneurysms},
  author = {Oubel, E. and Cebral, J. R. and {De Craene}, M. and Blanc, R. and Blasco, J. and Macho, J. and Putman, C. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Pavani, S.-K., Delgado, D., and Frangi, A. F. (2010). Haar-like features with optimally weighted rectangles for rapid object detection. Pattern Recognit, 43(1):160–172. DOI: 10.1016/j.patcog.2009.05.011.

journals Bib

@article{Pavani2010,
  doi = {10.1016/j.patcog.2009.05.011},
  pages = {160--172},
  number = {1},
  volume = {43},
  year = {2010},
  journal = {Pattern Recognit},
  title = {{Haar}-like features with optimally weighted rectangles for rapid object detection},
  author = {Pavani, S.-K. and Delgado, D. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Piella, G., De Craene, M., Bijnens, B. H., Tobon-Gomez, C., Huguet, M., and 2 more authors. (2010). Characterizing myocardial deformation in patients with left ventricular hypertrophy of different etiologies using the strain distribution obtained by magnetic resonance imaging. Rev Esp Cardiol, 63(11):1281–1291. DOI: 10.1016/s1885-5857(10)70253-x.

journals Bib

@article{Piella2010,
  doi = {10.1016/s1885-5857(10)70253-x},
  pages = {1281--1291},
  number = {11},
  volume = {63},
  year = {2010},
  journal = {Rev Esp Cardiol},
  title = {Characterizing myocardial deformation in patients with left ventricular hypertrophy of different etiologies using the strain distribution obtained by magnetic resonance imaging},
  author = {Piella, G. and {De Craene}, M. and Bijnens, B. H. and Tobon-Gomez, C. and Huguet, M. and Avegliano, G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Romero, D., Sebastian, R., Bijnens, B. H., Zimmerman, V., Boyle, P. M., and 2 more authors. (2010). Effects of the Purkinje system and cardiac geometry on biventricular pacing: a model study. Ann Biomed Eng, 38(4):1388–1398. DOI: 10.1007/s10439-010-9926-4.

journals Bib

@article{Romero2010a,
  doi = {10.1007/s10439-010-9926-4},
  pages = {1388--1398},
  number = {4},
  volume = {38},
  year = {2010},
  journal = {Ann Biomed Eng},
  title = {Effects of the Purkinje system and cardiac geometry on biventricular pacing: a model study},
  author = {Romero, D. and Sebastian, R. and Bijnens, B. H. and Zimmerman, V. and Boyle, P. M. and Vigmond, E. J. and Frangi, A. F.},
  programmes = {is-modelling},
}

Singh, P. K., Marzo, A., Staicu, C., William, M. G., Wilkinson, I., and 7 more authors. (2010). The effects of aortic coarctation on cerebral hemodynamics and its importance in the etiopathogenesis of intracranial aneurysms. J Vasc Interv Neurol, 3(1):17–30.

journals Bib

@article{Singh2010,
  pages = {17--30},
  number = {1},
  volume = {3},
  year = {2010},
  journal = {J Vasc Interv Neurol},
  title = {The effects of aortic coarctation on cerebral hemodynamics and its importance in the etiopathogenesis of intracranial aneurysms},
  author = {Singh, P. K. and Marzo, A. and Staicu, C. and William, M. G. and Wilkinson, I. and Lawford, P. V. and Rufenacht, D. A. and Bijlenga, P. and Frangi, A. F. and Hose, R. and Patel, U. J. and Coley, S. C.},
  programmes = {is-modelling},
}

Singh, P. K., Marzo, A., Howard, B., Rufenacht, D. A., Bijlenga, P., and 5 more authors. (2010). Effects of smoking and hypertension on wall shear stress and oscillatory shear index at the site of intracranial aneurysm formation. Clin Neurol Neurosurg, 112(4):306–313. DOI: 10.1016/j.clineuro.2009.12.018.

journals Bib

@article{Singh2010a,
  doi = {10.1016/j.clineuro.2009.12.018},
  pages = {306--313},
  number = {4},
  volume = {112},
  year = {2010},
  journal = {Clin Neurol Neurosurg},
  title = {Effects of smoking and hypertension on wall shear stress and oscillatory shear index at the site of intracranial aneurysm formation},
  author = {Singh, P. K. and Marzo, A. and Howard, B. and Rufenacht, D. A. and Bijlenga, P. and Frangi, A. F. and Lawford, P. V. and Coley, S. C. and Hose, D. R. and Patel, U. J.},
  programmes = {cp-realworld},
}

Sukno, F. M., Guerrero, J. J., and Frangi, A. F. (2010). Projective active shape models for pose-variant image analysis of quasi-planar objects: application to facial analysis. Pattern Recognit, 43(3):835–849. DOI: 10.1016/j.patcog.2009.07.001.

journals Bib

@article{Sukno2010a,
  doi = {10.1016/j.patcog.2009.07.001},
  pages = {835--849},
  number = {3},
  volume = {43},
  year = {2010},
  journal = {Pattern Recognit},
  title = {Projective active shape models for pose-variant image analysis of quasi-planar objects: application to facial analysis},
  author = {Sukno, F. M. and Guerrero, J. J. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Villa-Uriol, M. C., Larrabide, I., Pozo, J. M., Kim, M., Camara, O., and 7 more authors. (2010). Toward integrated management of cerebral aneurysms. Philos Trans A Math Phys Eng Sci, 368(1921):2961–2982. DOI: 10.1098/rsta.2010.0095.

journals Bib

@article{Villa-Uriol2010a,
  doi = {10.1098/rsta.2010.0095},
  pages = {2961--2982},
  number = {1921},
  volume = {368},
  year = {2010},
  journal = {Philos Trans A Math Phys Eng Sci},
  title = {Toward integrated management of cerebral aneurysms},
  author = {Villa-Uriol, M. C. and Larrabide, I. and Pozo, J. M. and Kim, M. and Camara, O. and {De Craene}, M. and Zhang, C. and Geers, A. J. and Morales, H. and Bogunovic, H. and Cardenes, R. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Yasuno, K., Bilguvar, K., Bijlenga, P., Low, S.-K., Krischek, B., and 64 more authors. (2010). Genome-wide association study of intracranial aneurysm identifies three new risk loci. Nat Genet, 42(5):420–U69.

journals Bib

@article{Yasuno2010b,
  pages = {420--U69},
  number = {5},
  volume = {42},
  year = {2010},
  journal = {Nat Genet},
  title = {Genome-wide association study of intracranial aneurysm identifies three new risk loci},
  author = {Yasuno, K. and Bilguvar, K. and Bijlenga, P. and Low, S.-K. and Krischek, B. and Auburger, G. and Simon, M. and Krex, D. and Arlier, Z. and Nayak, N. and Ruigrok, Y. M. and Niemela, M. and Tajima, A. and Fraunberg, M. and Doczi, T. and Wirjatijasa, F. and Hata, A. and Blasco, J. and Oszvald, A. and Kasuya, H. and Zilani, G. and Schoch, B. and Singh, P. and Stueer, C. and Risselada, R. and Beck, J. and Sola, T. and Ricciardi, F. and Aromaa, A. and Illig, T. and Schreiber, S. and van Duijn, C. M. and van den Berg, L. H. and Perret, C. and Proust, C. and Roder, C. and Ozturk, A. K. and Gaal, E. and Berg, D. and Geisen, C. and Friedrich, C. M. and Summers, P. and Frangi, A. F. and State, M. W. and Wichmann, H. E. and Breteler, M. M. B. and Wijmenga, C. and Mane, S. and Peltonen, L. and Elio, V. and Sturkenboom, M. C. J. M. and Lawford, P. and Byrne, J. and Macho, J. and Sandalcioglu, E. I. and Meyer, B. and Raabe, A. and Steinmetz, H. and Ruefenacht, D. and Jaaskelainen, J. E. and Hernesniemi, J. and Rinkel, G. J. E. and Zembutsu, H. and Inoue, I. and Palotie, A. and Cambien, F. and Nakamura, Y. and Lifton, R. P. and Guenel, M.},
  programmes = {cp-realworld},
}

Yilmaz, S., Bijlenga, P., Rashid, M., Collot-Teixeira, S., Brocheton, J., and 17 more authors. (2010). Gene expression signature in peripheral blood cells detects intracranial aneurysm. Neurosurgery, 67(2):540. DOI: 10.1227/01.neu.0000386985.32689.26.

journals Bib

@article{Yilmaz2010,
  doi = {10.1227/01.neu.0000386985.32689.26},
  pages = {540},
  number = {2},
  volume = {67},
  year = {2010},
  journal = {Neurosurgery},
  title = {Gene expression signature in peripheral blood cells detects intracranial aneurysm},
  author = {Yilmaz, S. and Bijlenga, P. and Rashid, M. and Collot-Teixeira, S. and Brocheton, J. and Proust, C. and Rotival, M. and Risselada, R. and Summers, P. and Blasco, J. and Singh, J. and Waterworth, A. and Ebeling, C. and Friedrich, C. and Frangi, A. F. and Macho, J. J. and Byrne, J. and Sturkenboom, M. C. J. M. and Schaller, K. and Cambien, F. and Gunel, M. and McGregor, J. L.},
  programmes = {cp-realworld},
}

Frangi, A. F. (2010). The @neurIST Project: Outreach Video. CISTIB. Available at: http://tinyurl.com/hl5vzvg.

Video.

outreach Bib

@online{aneurIST2010,
  note = {Video},
  url = {http://tinyurl.com/hl5vzvg},
  publisher = {CISTIB},
  year = {2010},
  title = {The @neur{IST} Project: Outreach Video},
  author = {Frangi, A. F.},
  programmes = {cp-realworld, is-ecosystems},
}

Pavani, S.-K. (2010). Face Detection and Adaptive Face Recognition Systems. PhD Thesis, Universitat Pompeu Fabra. Supervised by Frangi, A. F., and Delgado, D.

Cum Laude.

theses

2009

Camara, O., Oeltze, S., De Craene, M., Sebastian, R., Silva, E., and 5 more authors. (2009). Detecting abnormal septal motion by combining spatial and electrical information from endocardial mapping data in CRT candidates. Eur Heart J, 30:1015.

journals Bib

@article{Camara-Rey2009,
  pages = {1015},
  volume = {30},
  year = {2009},
  journal = {Eur Heart J},
  title = {Detecting abnormal septal motion by combining spatial and electrical information from endocardial mapping data in CRT candidates},
  author = {Camara, O. and Oeltze, S. and {De Craene}, M. and Sebastian, R. and Silva, E. and Tamborero, D. and Mont, L. and Sitges, M. and Bijnens, B. H. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Castro, M., Putman, C., Radaelli, A., Frangi, A. F., and Cebral, J. R. (2009). Hemodynamics and rupture of terminal cerebral aneurysms. Acad Radiol, 16(10):1201–1207. DOI: 10.1016/j.acra.2009.03.022.

journals Bib

@article{Castro2009,
  doi = {10.1016/j.acra.2009.03.022},
  pages = {1201--1207},
  number = {10},
  volume = {16},
  year = {2009},
  journal = {Acad Radiol},
  title = {Hemodynamics and rupture of terminal cerebral aneurysms},
  author = {Castro, M. and Putman, C. and Radaelli, A. and Frangi, A. F. and Cebral, J. R.},
  programmes = {is-modelling},
}

Delgado-Gomez, D., Fagertun, J., Ersboll, B., Sukno, F. M., and Frangi, A. F. (2009). Similarity-based fisherfaces. Pattern Recognit Lett, 30(12):1110–1116. DOI: 10.1016/j.patrec.2009.04.014.

journals Bib

@article{Delgado-Gomez2009,
  doi = {10.1016/j.patrec.2009.04.014},
  pages = {1110--1116},
  number = {12},
  volume = {30},
  year = {2009},
  journal = {Pattern Recognit Lett},
  title = {Similarity-based fisherfaces},
  author = {Delgado-Gomez, D. and Fagertun, J. and Ersboll, B. and Sukno, F. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Hoogendoorn, C., Sukno, F. M., Ordas, S., and Frangi, A. F. (2009). Bilinear models for spatio-temporal point distribution analysis. Int J Comput Vision, 85(3):237–252. DOI: 10.1007/s11263-009-0212-6.

journals Bib

@article{Hoogendoorn2009,
  doi = {10.1007/s11263-009-0212-6},
  pages = {237--252},
  number = {3},
  volume = {85},
  year = {2009},
  journal = {Int J Comput Vision},
  title = {Bilinear models for spatio-temporal point distribution analysis},
  author = {Hoogendoorn, C. and Sukno, F. M. and Ordas, S. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Huguet, M., Tobon-Gomez, C., Bijnens, B. H., Frangi, A. F., and Petit, M. (2009). Cardiac injuries in blunt chest trauma. J Cardiovasc Magn Reson, 11(35). DOI: doi.org/10.1186/1532-429X-11-35.

journals Bib

@article{Huguet2009,
  doi = {doi.org/10.1186/1532-429X-11-35},
  number = {35},
  volume = {11},
  year = {2009},
  journal = {J Cardiovasc Magn Reson},
  title = {Cardiac injuries in blunt chest trauma},
  author = {Huguet, M. and Tobon-Gomez, C. and Bijnens, B. H. and Frangi, A. F. and Petit, M.},
  programmes = {cp-realworld},
}

Meinhardt, E., Zacur, E., Frangi, A. F., and Caselles, V. (2009). 3D edge detection by selection of level surface patches. J Math Imaging Vision, 34(1):1–16. DOI: 10.1007/s10851-008-0118-x.

journals Bib

@article{Meinhardt2009,
  doi = {10.1007/s10851-008-0118-x},
  pages = {1--16},
  number = {1},
  volume = {34},
  year = {2009},
  journal = {J Math Imaging Vision},
  title = {{{3D}} edge detection by selection of level surface patches},
  author = {Meinhardt, E. and Zacur, E. and Frangi, A. F. and Caselles, V.},
  programmes = {cp-realworld},
}

Sebastian, R., Bijnens, B. H., and Frangi, A. F. (2009). The role of the myocardial fiber orientation in homogenizing transmural electrical activation. Eur Heart J, 30:72.

journals Bib

@article{Sebastian2009,
  pages = {72},
  volume = {30},
  year = {2009},
  journal = {Eur Heart J},
  title = {The role of the myocardial fiber orientation in homogenizing transmural electrical activation},
  author = {Sebastian, R. and Bijnens, B. H. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Singh, P. K., Marzo, A., Coley, S. C., Berti, G., Bijlenga, P., and 7 more authors. (2009). The role of computational fluid dynamics in the management of unruptured intracranial aneurysms: a clinicians’ view. Comput Intell Neurosci:760364. DOI: 10.1155/2009/760364.

journals Bib

@article{Singh2009,
  doi = {10.1155/2009/760364},
  pages = {760364},
  year = {2009},
  journal = {Comput Intell Neurosci},
  title = {The role of computational fluid dynamics in the management of unruptured intracranial aneurysms: a clinicians' view},
  author = {Singh, P. K. and Marzo, A. and Coley, S. C. and Berti, G. and Bijlenga, P. and Lawford, P. V. and Villa-Uriol, M.-C. and Rufenacht, D. A. and McCormack, K. M. and Frangi, A. F. and Patel, U. J. and Hose, D. R.},
  programmes = {cp-realworld, cp-twinning},
}

Suinesiaputra, A., Frangi, A. F., Kaandorp, T. A. M., Lamb, H. J., Bax, J. J., and 2 more authors. (2009). Automated detection of regional wall motion abnormalities based on a statistical model applied to multislice short-axis cardiac MR images. IEEE Trans Med Imaging, 28(4):595–607. DOI: 10.1109/tmi.2008.2008966.

journals Bib

@article{Suinesiaputra2009,
  doi = {10.1109/tmi.2008.2008966},
  pages = {595--607},
  number = {4},
  volume = {28},
  year = {2009},
  journal = {{IEEE} Trans Med Imaging},
  title = {Automated detection of regional wall motion abnormalities based on a statistical model applied to multislice short-axis cardiac {MR} images},
  author = {Suinesiaputra, A. and Frangi, A. F. and Kaandorp, T. A. M. and Lamb, H. J. and Bax, J. J. and Reiber, J. H. C. and Lelieveldt, B. P. F.},
  programmes = {cp-realworld},
}

Young, A. A., and Frangi, A. F. (2009). Computational cardiac atlases: from patient to population and back. Exp Physiol, 94(5):578–596. DOI: 10.1113/expphysiol.2008.044081.

journals Bib

@article{Young2009,
  doi = {10.1113/expphysiol.2008.044081},
  pages = {578--596},
  number = {5},
  volume = {94},
  year = {2009},
  journal = {Exp Physiol},
  title = {Computational cardiac atlases: from patient to population and back},
  author = {Young, A. A. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Zhang, C., Villa-Uriol, M.-C., De Craene, M., Pozo, J. M., and Frangi, A. F. (2009). Morphodynamic analysis of cerebral aneurysm pulsation from time-resolved rotational angiography. IEEE Trans Med Imaging, 28(7):1105–1116. DOI: 10.1109/tmi.2009.2012405.

journals Bib

@article{Zhang2009a,
  doi = {10.1109/tmi.2009.2012405},
  pages = {1105--1116},
  number = {7},
  volume = {28},
  year = {2009},
  journal = {{IEEE} Trans Med Imaging},
  title = {Morphodynamic analysis of cerebral aneurysm pulsation from time-resolved rotational angiography},
  author = {Zhang, C. and Villa-Uriol, M.-C. and {De Craene}, M. and Pozo, J. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Butakoff, C. (2009). Efficient Techniques for Statistical Shape Model Building and Fusion. PhD Thesis, Universidad de Zaragoza. Supervised by Frangi, A. F.

Cum Laude.

theses

2008

Laclaustra, M., Frangi, A. F., Frangi, A. G., Casasnovas, J. A., and Cia, P. (2008). Association of endothelial function and vascular data with ldl-c and HDL-c in a homogeneous population of middle-aged, healthy military men: evidence for a critical role of optimal lipid levels. Int J Cardiol, 125(3):376–382. DOI: 10.1016/j.ijcard.2007.03.001.

journals Bib

@article{Laclaustra2008,
  doi = {10.1016/j.ijcard.2007.03.001},
  pages = {376--382},
  number = {3},
  volume = {125},
  year = {2008},
  journal = {Int J Cardiol},
  title = {Association of endothelial function and vascular data with ldl-c and {HDL}-c in a homogeneous population of middle-aged, healthy military men: evidence for a critical role of optimal lipid levels},
  author = {Laclaustra, M. and Frangi, A. F. and Frangi, A. G. and Casasnovas, J. A. and Cia, P.},
  programmes = {cp-realworld, is-trials},
}

Radaelli, A. G., Augsburger, L., Cebral, J. R., Ohta, M., Ruefenacht, D. A., and 11 more authors. (2008). Reproducibility of haemodynamical simulations in a subject-specific stented aneurysm model - a report on the virtual intracranial stenting challenge 2007. J Biomech, 41(10):2069–2081. DOI: 10.1016/j.jbiomech.2008.04.035.

journals Bib

@article{Radaellia2008,
  doi = {10.1016/j.jbiomech.2008.04.035},
  pages = {2069--2081},
  number = {10},
  volume = {41},
  year = {2008},
  journal = {J Biomech},
  title = {Reproducibility of haemodynamical simulations in a subject-specific stented aneurysm model - a report on the virtual intracranial stenting challenge 2007},
  author = {Radaelli, A. G. and Augsburger, L. and Cebral, J. R. and Ohta, M. and Ruefenacht, D. A. and Balossino, R. and Benndorf, G. and Hose, D. R. and Marzo, A. and Metcalfe, R. and Mortier, P. and Mut, F. and Reymond, P. and Socci, L. and Verhegghe, B. and Frangi, A. F.},
  programmes = {is-modelling, is-trials},
}

Sukno, F. M., and Frangi, A. F. (2008). Reliability estimation for statistical shape models. IEEE Trans Image Process, 17(12):2442–2455. DOI: 10.1109/tip.2008.2006604.

journals Bib

@article{Sukno2008,
  doi = {10.1109/tip.2008.2006604},
  pages = {2442--2455},
  number = {12},
  volume = {17},
  year = {2008},
  journal = {{IEEE} Trans Image Process},
  title = {Reliability estimation for statistical shape models},
  author = {Sukno, F. M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Tobon-Gomez, C., Butakoff, C., Aguade, S., Sukno, F., Moragas, G., and 1 more author. (2008). Automatic construction of 3D-ASM intensity models by simulating image acquisition: application to myocardial gated SPECT studies. IEEE Trans Med Imaging, 27(11):1655–1667. DOI: 10.1109/tmi.2008.2004819.

journals Bib

@article{Tobon-Gomez2008,
  doi = {10.1109/tmi.2008.2004819},
  pages = {1655--1667},
  number = {11},
  volume = {27},
  year = {2008},
  journal = {{IEEE} Trans Med Imaging},
  title = {Automatic construction of {{3D}}-ASM intensity models by simulating image acquisition: application to myocardial gated SPECT studies},
  author = {Tobon-Gomez, C. and Butakoff, C. and Aguade, S. and Sukno, F. and Moragas, G. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Dunlop, R., Arbona, A., Rajasekaran, H., Lo Iacono, L., Fingberg, J., and 11 more authors. (2008). @neurIST - chronic disease management through integration of heterogeneous data and computer-interpretable guideline services. In Solomonides, T., Silverstein, J. C., Saltz, J., Legre, Y., Kratz, M., and 3 more authors. (Eds.). Global Healthgrid: E-science Meets Biomedical Informatics. (pp. 173–177).

Series: Studies in Health Technology and Informatics. Volume: 138.

chapters Bib

@inbook{Dunlop2008,
  editor = {Solomonides, T. and Silverstein, J. C. and Saltz, J. and Legre, Y. and Kratz, M. and Foster, I. and Breton, V. and Beck, J. R.},
  pages = {173--177},
  volume = {138},
  series = {Studies in Health Technology and Informatics},
  booktitle = {Global Healthgrid: E-science Meets Biomedical Informatics},
  year = {2008},
  title = {{@neurIST} - chronic disease management through integration of heterogeneous data and computer-interpretable guideline services},
  author = {Dunlop, R. and Arbona, A. and Rajasekaran, H. and {Lo Iacono}, L. and Fingberg, J. and Summers, P. and Benkner, S. and Engelbrecht, G. and Chiarini, A. and Friedrich, C. M. and Moore, B. and Bijlenga, P. and Iavindrasana, J. and Hose, R. D. and Frangi, A. F. and {The @neur{IST} Consortium}},
  programmes = {cp-twinning, is-trials, is-ecosystems},
}

Iavindrasana, J., Lo Iacono, L., Mueller, H., Periz, I., Summers, P., and 16 more authors. (2008). The @neurIST project. In Solomonides, T., Silverstein, J. C., Saltz, J., Legre, Y., Kratz, M., and 3 more authors. (Eds.). Global Healthgrid: E-science Meets Biomedical Informatics. (pp. 161–164).

Series: Studies in Health Technology and Informatics. Volume: 138.

chapters Bib

@inbook{Iavindrasana2008,
  editor = {Solomonides, T. and Silverstein, J. C. and Saltz, J. and Legre, Y. and Kratz, M. and Foster, I. and Breton, V. and Beck, J. R.},
  pages = {161--164},
  volume = {138},
  series = {Studies in Health Technology and Informatics},
  booktitle = {Global Healthgrid: E-science Meets Biomedical Informatics},
  year = {2008},
  title = {The {@neurIST} project},
  author = {Iavindrasana, J. and {Lo Iacono}, L. and Mueller, H. and Periz, I. and Summers, P. and Wright, J. and Friedrich, C. M. and Dach, H. and Gattermayer, T. and Engelbrecht, G. and Benkner, S. and Hofmann-Apitius, M. and Dunlop, R. and Arbona, A. and Rajasekaran, H. and Fingberg, J. and Chiarini, A. and Moore, B. and Bijlenga, P. and Hose, R. D. and Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning, is-ecosystems},
}

Frangi, A. F. (2008). The @neurIST Project: Biomedical data integration supporting in silico understanding of cerebral aneurysms and individualized disease management and interventional planning. The Parliament Magazines Research Review, 7:52–53.

outreach Bib

@article{Frangi2008,
  pages = {52--53},
  volume = {7},
  journal = {The Parliament Magazines Research Review},
  month = nov,
  year = {2008},
  author = {Frangi, A. F.},
  programmes = {cp-realworld, cp-twinning, is-ecosystems},
}

Sukno, F. M. (2008). Invariance and Reliability for Statistical Shape Models. PhD Thesis, Universidad de Zaragoza. Supervised by Frangi, A. F.

Cum Laude.

theses
Oubel, E. (2008). Registration-based Motion and Deformation Analysis of Cardiovascular Image Sequences. PhD Thesis, Universidad de Zaragoza. Supervised by Frangi, A. F.

Cum Laude.

theses

2007

Barber, D. C., Oubel, E., Frangi, A. F., and Hose, D. R. (2007). Efficient computational fluid dynamics mesh generation by image registration. Med Image Anal, 11(6):648–662. DOI: 10.1016/j.media.2007.06.011.

journals Bib

@article{Barber2007,
  doi = {10.1016/j.media.2007.06.011},
  pages = {648--662},
  number = {6},
  volume = {11},
  year = {2007},
  journal = {Med Image Anal},
  title = {Efficient computational fluid dynamics mesh generation by image registration},
  author = {Barber, D. C. and Oubel, E. and Frangi, A. F. and Hose, D. R.},
  programmes = {cp-realworld, cp-twinning},
}

Hernandez, M., and Frangi, A. F. (2007). Non-parametric geodesic active regions: method and evaluation for cerebral aneurysms segmentation in 3DRA and CTA. Med Image Anal, 11(3):224–241. DOI: 10.1016/j.media.2007.01.002.

journals Bib

@article{Hernandez2007,
  doi = {10.1016/j.media.2007.01.002},
  pages = {224--241},
  number = {3},
  volume = {11},
  year = {2007},
  journal = {Med Image Anal},
  title = {Non-parametric geodesic active regions: method and evaluation for cerebral aneurysms segmentation in {3DRA} and {CTA}},
  author = {Hernandez, M. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Laclaustra, M., Frangi, A. F., Garcia, D., Boisrobert, L., Frangi, A. G., and 1 more author. (2007). Detailed exploration of the endothelium: parameterization of flow-mediated dilation through principal component analysis. Physiol Meas, 28(3):301–320. DOI: 10.1088/0967-3334/28/3/006.

journals Bib

@article{Laclaustra2007,
  doi = {10.1088/0967-3334/28/3/006},
  pages = {301--320},
  number = {3},
  volume = {28},
  year = {2007},
  journal = {Physiol Meas},
  title = {Detailed exploration of the endothelium: parameterization of flow-mediated dilation through principal component analysis},
  author = {Laclaustra, M. and Frangi, A. F. and Garcia, D. and Boisrobert, L. and Frangi, A. G. and Pascual, I.},
  programmes = {cp-realworld},
}

Millan, R. D., Dempere-Marco, L., Pozo, J. M., Cebral, J. R., and Frangi, A. F. (2007). Morphological characterization of intracranial aneurysms using 3D moment invariants. IEEE Trans Med Imaging, 26(9):1270–1282. DOI: 10.1109/tmi.2007.901008.

journals Bib

@article{Millan2007,
  doi = {10.1109/tmi.2007.901008},
  pages = {1270--1282},
  number = {9},
  volume = {26},
  year = {2007},
  journal = {{IEEE} Trans Med Imaging},
  title = {Morphological characterization of intracranial aneurysms using {3D} moment invariants},
  author = {Millan, R. D. and Dempere-Marco, L. and Pozo, J. M. and Cebral, J. R. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Olafsdottir, H., Darvann, T. A., Hermann, N. V., Oubel, E., Ersboll, B. K., and 5 more authors. (2007). Computational mouse atlases and their application to automatic assessment of craniofacial dysmorphology caused by the Crouzon mutation fgfr2(c342y). J Anat, 211(1):37–52. DOI: 10.1111/j.1469-7580.2007.00751.x.

journals Bib

@article{Olafsdottir2007c,
  doi = {10.1111/j.1469-7580.2007.00751.x},
  pages = {37--52},
  number = {1},
  volume = {211},
  year = {2007},
  journal = {J Anat},
  title = {Computational mouse atlases and their application to automatic assessment of craniofacial dysmorphology caused by the Crouzon mutation fgfr2(c342y)},
  author = {Olafsdottir, H. and Darvann, T. A. and Hermann, N. V. and Oubel, E. and Ersboll, B. K. and Frangi, A. F. and Larsen, P. and Perlyn, {C.} A. and Morriss-Kay, G. M. and Kreiborg, S.},
  programmes = {cp-realworld},
}

Sukno, F. M., Ordas, S., Butakoff, C., Cruz, S., and Frangi, A. F. (2007). Active shape models with invariant optimal features: application to facial analysis. IEEE Trans Pattern Anal Mach Intell, 29(7):1105–1117. DOI: 10.1109/tpami.2007.1041.

journals Bib

@article{Sukno2007a,
  doi = {10.1109/tpami.2007.1041},
  pages = {1105--1117},
  number = {7},
  volume = {29},
  year = {2007},
  journal = {{IEEE} Trans Pattern Anal Mach Intell},
  title = {Active shape models with invariant optimal features: application to facial analysis},
  author = {Sukno, F. M. and Ordas, S. and Butakoff, C. and Cruz, S. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Tobon-Gomez, C., Ordas, S., Frangi, A. F., Aguade, S., and Castell, J. (2007). Statistical deformable models for cardiac segmentation and functional analysis in gated-SPECT studies. In Suri, J., and Farag, A. (Eds.). Deformable Models: Biomedical and Clinical Applications. (pp. 163–193). Springer.

chapters Bib

@inbook{Tobon-Gomez2007a,
  doi = {10.1007/978-0-387-68413-0_6},
  editor = {Suri, J. and Farag, A.},
  pages = {163--193},
  publisher = {Springer},
  booktitle = {Deformable Models: Biomedical and Clinical Applications},
  year = {2007},
  title = {Statistical deformable models for cardiac segmentation and functional analysis in gated-SPECT studies},
  author = {Tobon-Gomez, C. and Ordas, S. and Frangi, A. F. and Aguade, S. and Castell, J.},
  programmes = {cp-realworld},
}

Frangi, A. F., Ruiz, A., and Hofmann, M. (2007). Understanding cerebral aneurysms: The @neurIST project. ERCIM News. Available at: http://tinyurl.com/y7sfqyoq.

Special Theme on the Digital Patient.

outreach Bib

@online{Frangi2007b,
  addendum = {Special Theme on the Digital Patient},
  organization = {ERCIM News},
  url = {http://tinyurl.com/y7sfqyoq},
  month = apr,
  year = {2007},
  title = {Understanding cerebral aneurysms: The {@neurIST} project},
  author = {Frangi, A. F. and Ruiz, A. and Hofmann, M.},
  programmes = {cp-realworld, cp-twinning, is-ecosystems},
}

Frangi, A. F., Hose, R. D., and Ruefenacht, D. A. (2007). The @neurIST Project: Towards understanding of cerebral aneurysms. SPIE Newsroom. Available at: http://tinyurl.com/ycexcalq.

outreach Bib

@online{Frangi2007a,
  doi = {10.1117/2.1200706.0782},
  organization = {SPIE Newsroom},
  url = {http://tinyurl.com/ycexcalq},
  month = jun,
  year = {2007},
  title = {The {@neurIST} Project: Towards understanding of cerebral aneurysms},
  author = {Frangi, A. F. and Hose, R. D. and Ruefenacht, D. A.},
  programmes = {cp-realworld, cp-twinning, is-ecosystems},
}

2006

Assen, H. C., Danilouchkine, M. G., Frangi, A. F., Ordas, S., Westenberg, J. J. M., and 2 more authors. (2006). SPASM: a 3D-ASM for segmentation of sparse and arbitrarily oriented cardiac MRI data. Med Image Anal, 10(2):286–303. DOI: 10.1016/j.media.2005.12.001.

journals Bib

@article{Assen2006,
  doi = {10.1016/j.media.2005.12.001},
  pages = {286--303},
  number = {2},
  volume = {10},
  year = {2006},
  journal = {Med Image Anal},
  title = {SPASM: a {{3D}}-ASM for segmentation of sparse and arbitrarily oriented cardiac {MRI} data},
  author = {van Assen, H. C. and Danilouchkine, M. G. and Frangi, A. F. and Ordas, S. and Westenberg, J. J. M. and Reiber, J. H. C. and Lelieveldt, B. R.},
  programmes = {cp-realworld},
}

Butakoff, C., and Frangi, A. F. (2006). A framework for weighted fusion of multiple statistical models of shape and appearance. IEEE Trans Pattern Anal Mach Intell, 28(11):1847–1857. DOI: 10.1109/tpami.2006.215.

journals Bib

@article{Butakoff2006,
  doi = {10.1109/tpami.2006.215},
  pages = {1847--1857},
  number = {11},
  volume = {28},
  year = {2006},
  journal = {{IEEE} Trans Pattern Anal Mach Intell},
  title = {A framework for weighted fusion of multiple statistical models of shape and appearance},
  author = {Butakoff, C. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Frangi, A. F., Radeva, P. I., and Santos, A. (2006). Special Issue on International Conference on Functional Imaging and Modelling of the Heart (FIMH). Med Image Anal, 10(4):612–614.

journals Bib

@article{Frangi2006,
  pages = {612--614},
  number = {4},
  volume = {10},
  year = {2006},
  journal = {Med Image Anal},
  title = {Special Issue on International Conference on Functional Imaging and Modelling of the Heart (FIMH)},
  author = {Frangi, A. F. and Radeva, P. I. and Santos, A.},
  programmes = {cp-realworld, is-modelling},
}

Frangi, A. F., and Delingette, H. (Eds.). (2006). From Statistical Atlases to Personalized Models: Understanding Complex Diseases in Populations and Individuals: Proceedings of the International Workshop. Copenhagen: IT University of Copenhagen.

Series: Technical Report.

books Bib

@book{Book_Frangi2006,
  location = {Copenhagen},
  subtitle = {Proceedings of the International Workshop},
  editor = {Frangi, A. F. and Delingette, H.},
  series = {Technical Report},
  publisher = {IT University of Copenhagen},
  year = {2006},
  title = {From Statistical Atlases to Personalized Models: Understanding Complex Diseases in Populations and Individuals},
  programmes = {cp-twinning},
}

Arbona, A., Benkner, S., Fingberg, J., Frangi, A. F., Hofmann, M., and 4 more authors. (2006). Outlook for grid service technologies within the @neurIST eHealth environment. In Hernandez, V., and Blanquer, I. (Eds.). Challenges and Opportunities of Healthgrids. (pp. 401–404).

Series: Studies in Health Technology and Informatics. Volume: 120.

chapters Bib

@inbook{Arbona2006,
  editor = {Hernandez, V. and Blanquer, I.},
  pages = {401--404},
  volume = {120},
  series = {Studies in Health Technology and Informatics},
  booktitle = {Challenges and Opportunities of Healthgrids},
  year = {2006},
  title = {Outlook for grid service technologies within the {@neurIST} eHealth environment},
  author = {Arbona, A. and Benkner, S. and Fingberg, J. and Frangi, A. F. and Hofmann, M. and Hose, D. R. and Lonsdale, G. and Ruefenacht, D. and Viceconti, M.},
  programmes = {cp-twinning, is-ecosystems},
}

2005

Cebral, J. R., Castro, M. A., Appanaboyina, S., Putman, C. M., Millan, D., and 1 more author. (2005). Efficient pipeline for image-based patient-specific analysis of cerebral aneurysm hemodynamics: technique and sensitivity. IEEE Trans Med Imaging, 24(4):457–467. DOI: 10.1109/tmi.2005.844159.

journals Bib

@article{Cebral2005,
  doi = {10.1109/tmi.2005.844159},
  pages = {457--467},
  number = {4},
  volume = {24},
  year = {2005},
  journal = {{IEEE} Trans Med Imaging},
  title = {Efficient pipeline for image-based patient-specific analysis of cerebral aneurysm hemodynamics: technique and sensitivity},
  author = {Cebral, J. R. and Castro, M. A. and Appanaboyina, S. and Putman, C. M. and Millan, D. and Frangi, A. F.},
  programmes = {is-modelling},
}

Frangi, A. F., Amini, A. A., and Bullitt, E. (2005). Vascular imaging. IEEE Trans Med Imaging, 24(4):433–435. DOI: 10.1109/tmi.2005.845131.

journals Bib

@article{Frangi2005b,
  doi = {10.1109/tmi.2005.845131},
  pages = {433--435},
  number = {4},
  volume = {24},
  year = {2005},
  journal = {{IEEE} Trans Med Imaging},
  title = {Vascular imaging},
  author = {Frangi, A. F. and Amini, A. A. and Bullitt, E.},
  programmes = {cp-realworld},
}

Yang, J., Frangi, A. F., Yang, J. Y., Zhang, D., and Jin, Z. (2005). KPCA plus LDA: a complete kernel fisher discriminant framework for feature extraction and recognition. IEEE Trans Pattern Anal Mach Intell, 27(2):230–244. DOI: 10.1109/tpami.2005.33.

journals Bib

@article{Yang2005,
  doi = {10.1109/tpami.2005.33},
  pages = {230--244},
  number = {2},
  volume = {27},
  year = {2005},
  journal = {{IEEE} Trans Pattern Anal Mach Intell},
  title = {KPCA plus {LDA}: a complete kernel fisher discriminant framework for feature extraction and recognition},
  author = {Yang, J. and Frangi, A. F. and Yang, J. Y. and Zhang, D. and Jin, Z.},
  programmes = {cp-realworld},
}

Frangi, A. F., Radeva, P., Santos, A., and Hernandez, M. (Eds.). (2005). Functional Imaging and Modelling of the Heart (FIMH): Proceedings of the International Conference. Berlin: Springer-Verlag.

ISBN: 978-35-4026-161-2. Series: Lecture Notes in Computer Science. Volume: 3504.

books Bib

@book{Book_Frangi2005,
  subtitle = {Proceedings of the International Conference},
  editor = {Frangi, A. F. and Radeva, P. and Santos, A. and Hernandez, M.},
  isbn = {978-35-4026-161-2},
  volume = {3504},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer-Verlag},
  location = {Berlin},
  year = {2005},
  title = {Functional Imaging and Modelling of the Heart ({FIMH})},
  programmes = {cp-realworld, is-modelling},
}

Frangi, A. F., Laclaustra, M., and Yang, J. (2005). Computerized analysis and vasodilation parameterization in flow-mediated dilation tests from ultrasonic image sequences. In Suri, J. S., Wilson, D. L., and Laxminarayan, S. (Eds.). Handbook of Biomedical Image Analysis, Vol II: Segmentation Models Pt B. (pp. 229–266). Kluwer Academic Publisher.

Volume: 2.

chapters Bib

@inbook{Frangi2005,
  doi = {10.1007/0-306-48606-7_5},
  editor = {Suri, J. S. and Wilson, D. L. and Laxminarayan, S.},
  pages = {229--266},
  volume = {2},
  publisher = {Kluwer Academic Publisher},
  booktitle = {Handbook of Biomedical Image Analysis, Vol II: Segmentation Models Pt B},
  year = {2005},
  title = {Computerized analysis and vasodilation parameterization in flow-mediated dilation tests from ultrasonic image sequences},
  author = {Frangi, A. F. and Laclaustra, M. and Yang, J.},
  programmes = {cp-realworld},
}

Frangi, A. F., Niessen, W. J., Viergever, M. A., and Lelieveldt, B. P. F. (2005). A survey of three-dimensional modelling techniques for quantitative functional analysis of cardiac images. In Landini, L., and Santarelli, M. F. (Eds.). Advanced Image Processing in Magnetic Resonance Imaging. (pp. 267–341). CRC Pres.

Volume: 26.

chapters Bib

@inbook{Frangi2005a,
  doi = {10.1201/9781420028669.ch9},
  editor = {Landini, L. and Santarelli, M. F.},
  pages = {267--341},
  volume = {26},
  publisher = {CRC Pres},
  booktitle = {Advanced Image Processing in Magnetic Resonance Imaging},
  year = {2005},
  title = {A survey of three-dimensional modelling techniques for quantitative functional analysis of cardiac images},
  author = {Frangi, A. F. and Niessen, W. J. and Viergever, M. A. and Lelieveldt, B. P. F.},
  programmes = {cp-realworld},
}

Hernandez, M., Frangi, A. F., and Sapiro, G. (2005). Quantification of brain aneurysm dimensions from CTA for surgical planning of coiling interventions. In Suri, J. A., Wilson, D. L., and Laxminarayan, S. (Eds.). Handbook of Biomedical Image Analysis, Vol III: Registration Models. (pp. 185–217). Kluwer Academic Publisher.

chapters Bib

@inbook{Hernandez2005a,
  editor = {Suri, J. A. and Wilson, D. L. and Laxminarayan, S.},
  pages = {185--217},
  publisher = {Kluwer Academic Publisher},
  booktitle = {Handbook of Biomedical Image Analysis, Vol III: Registration Models},
  year = {2005},
  author = {Hernandez, M. and Frangi, A. F. and Sapiro, G.},
  programmes = {cp-realworld},
}

Ordas, S., van Assen, H. C., Puente, J., Lelieveldt, B. P. F., and Frangi, A. F. (2005). Parametric optimization of a model-based segmentation algorithm for cardiac MR image analysis: a grid-computing approach. In Solomonides, T., and McClatchey, R. (Eds.). From Grid to Healthgrid. (pp. 146–156).

Series: Studies in Health Technology and Informatics. Volume: 112.

chapters Bib

@inbook{Ordas2005a,
  editor = {Solomonides, T. and McClatchey, R.},
  pages = {146--156},
  volume = {112},
  series = {Studies in Health Technology and Informatics},
  booktitle = {From Grid to Healthgrid},
  year = {2005},
  title = {Parametric optimization of a model-based segmentation algorithm for cardiac MR image analysis: a grid-computing approach},
  author = {Ordas, S. and {van Assen}, H. C. and Puente, J. and Lelieveldt, B. P. F. and Frangi, A. F.},
  programmes = {cp-realworld},
}

2004

Yang, J., Frangi, A. F., and Yang, J. Y. (2004). A new kernel Fisher discriminant algorithm with application to face recognition. Neurocomputing, 56:415–421. DOI: 10.1016/s0925-2312(03)00444-2.

journals Bib

@article{Yang2004,
  doi = {10.1016/s0925-2312(03)00444-2},
  pages = {415--421},
  volume = {56},
  year = {2004},
  journal = {Neurocomputing},
  title = {A new kernel Fisher discriminant algorithm with application to face recognition},
  author = {Yang, J. and Frangi, A. F. and Yang, J. Y.},
  programmes = {cp-realworld},
}

Yang, J., Zhang, D., Frangi, A. F., and Yang, J. Y. (2004). Two-dimensional PCA: a new approach to appearance-based face representation and recognition. IEEE Trans Pattern Anal Mach Intell, 26(1):131–137. DOI: 10.1109/tpami.2004.1261097.

journals Bib

@article{Yang2004a,
  doi = {10.1109/tpami.2004.1261097},
  pages = {131--137},
  number = {1},
  volume = {26},
  year = {2004},
  journal = {{IEEE} Trans Pattern Anal Mach Intell},
  title = {Two-dimensional {PCA}: a new approach to appearance-based face representation and recognition},
  author = {Yang, J. and Zhang, D. and Frangi, A. F. and Yang, J. Y.},
  programmes = {cp-realworld},
}

Yang, J., Jin, Z., Yang, J. Y., Zhang, D., and Frangi, A. F. (2004). Essence of kernel fisher discriminant: KPCA plus LDA. Pattern Recognit, 37(10):2097–2100. DOI: 10.1016/j.patcog.2003.10.015.

journals Bib

@article{Yang2004b,
  doi = {10.1016/j.patcog.2003.10.015},
  pages = {2097--2100},
  number = {10},
  volume = {37},
  year = {2004},
  journal = {Pattern Recognit},
  title = {Essence of kernel fisher discriminant: KPCA plus {LDA}},
  author = {Yang, J. and Jin, Z. and Yang, J. Y. and Zhang, D. and Frangi, A. F.},
  programmes = {cp-realworld},
}

2003

Frangi, A. F., Laclaustra, M., and Lamata, P. (2003). A registration-based approach to quantify flow-mediated dilation (FMD) of the brachial artery in ultrasound image sequences. IEEE Trans Med Imaging, 22(11):1458–1469. DOI: 10.1109/tmi.2003.819278.

journals Bib

@article{Frangi2003a,
  doi = {10.1109/tmi.2003.819278},
  pages = {1458--1469},
  number = {11},
  volume = {22},
  year = {2003},
  journal = {{IEEE} Trans Med Imaging},
  title = {A registration-based approach to quantify flow-mediated dilation ({FMD}) of the brachial artery in ultrasound image sequences},
  author = {Frangi, A. F. and Laclaustra, M. and Lamata, P.},
  programmes = {cp-realworld},
}

Rueckert, D., Frangi, A. F., and Schnabel, J. A. (2003). Automatic construction of 3-D statistical deformation models of the brain using nonrigid registration. IEEE Trans Med Imaging, 22(8):1014–1025. DOI: 10.1109/tmi.2003.815865.

journals Bib

@article{Rueckert2003,
  doi = {10.1109/tmi.2003.815865},
  pages = {1014--1025},
  number = {8},
  volume = {22},
  year = {2003},
  journal = {{IEEE} Trans Med Imaging},
  title = {Automatic construction of {3-D} statistical deformation models of the brain using nonrigid registration},
  author = {Rueckert, D. and Frangi, A. F. and Schnabel, J. A.},
  programmes = {cp-realworld},
}

Yang, H., Yang, J. Y., and Frangi, A. F. (2003). Combined fisherfaces framework. Image Vision Comput, 21(12):1037–1044. DOI: 10.1016/j.imavis.2003.07.005.

journals Bib

@article{Yang2003,
  doi = {10.1016/j.imavis.2003.07.005},
  pages = {1037--1044},
  number = {12},
  volume = {21},
  year = {2003},
  journal = {Image Vision Comput},
  title = {Combined fisherfaces framework},
  author = {Yang, H. and Yang, J. Y. and Frangi, A. F.},
  programmes = {cp-realworld},
}

Yang, R., Yang, J. Y., Frangi, A. F., and Zhang, D. (2003). Uncorrelated projection discriminant analysis and its application to face image feature extraction. Int J Pattern Recognit Artif Intell, 17(8):1325–1347. DOI: 10.1142/s0218001403002903.

journals Bib

@article{Yang2003a,
  doi = {10.1142/s0218001403002903},
  pages = {1325--1347},
  number = {8},
  volume = {17},
  year = {2003},
  journal = {Int J Pattern Recognit Artif Intell},
  title = {Uncorrelated projection discriminant analysis and its application to face image feature extraction},
  author = {Yang, R. and Yang, J. Y. and Frangi, A. F. and Zhang, D.},
  programmes = {cp-realworld},
}

2002

Frangi, A. F., Riu, P. J., Rosell, J., and Viergever, M. A. (2002). Propagation of measurement noise through backprojection reconstruction in electrical impedance tomography. IEEE Trans Med Imaging, 21(6):566–578. DOI: 10.1109/tmi.2002.800612.

journals Bib

@article{Frangi2002,
  doi = {10.1109/tmi.2002.800612},
  pages = {566--578},
  number = {6},
  volume = {21},
  year = {2002},
  journal = {{IEEE} Trans Med Imaging},
  title = {Propagation of measurement noise through backprojection reconstruction in electrical impedance tomography},
  author = {Frangi, A. F. and Riu, P. J. and Rosell, J. and Viergever, M. A.},
  programmes = {cp-realworld},
}

Frangi, A. F., Rueckert, D., Schnabel, J. A., and Niessen, W. J. (2002). Automatic construction of multiple-object three-dimensional statistical shape models: application to cardiac modeling. IEEE Trans Med Imaging, 21(9):1151–1166. DOI: 10.1109/tmi.2002.804426.

journals Bib

@article{Frangi2002a,
  doi = {10.1109/tmi.2002.804426},
  pages = {1151--1166},
  number = {9},
  volume = {21},
  year = {2002},
  journal = {{IEEE} Trans Med Imaging},
  title = {Automatic construction of multiple-object three-dimensional statistical shape models: application to cardiac modeling},
  author = {Frangi, A. F. and Rueckert, D. and Schnabel, J. A. and Niessen, W. J.},
  programmes = {cp-realworld},
}

Frangi, A. F., Rueckert, D., and Duncan, J. S. (2002). Three-dimensional cardiovascular image analysis. IEEE Trans Med Imaging, 21(9):1005–1010.

journals Bib

@article{Frangi2002b,
  pages = {1005--1010},
  number = {9},
  volume = {21},
  year = {2002},
  journal = {{IEEE} Trans Med Imaging},
  title = {Three-dimensional cardiovascular image analysis},
  author = {Frangi, A. F. and Rueckert, D. and Duncan, J. S.},
  programmes = {cp-realworld},
}

Ginneken, B., Frangi, A. F., Staal, J. J., Romeny, B. M. T., and Viergever, M. A. (2002). Active shape model segmentation with optimal features. IEEE Trans Med Imaging, 21(8):924–933. DOI: 10.1109/tmi.2002.803121.

journals Bib

@article{Ginneken2002,
  doi = {10.1109/tmi.2002.803121},
  pages = {924--933},
  number = {8},
  volume = {21},
  year = {2002},
  journal = {{IEEE} Trans Med Imaging},
  title = {Active shape model segmentation with optimal features},
  author = {van Ginneken, B. and Frangi, A. F. and Staal, J. J. and Romeny, B. M. T. and Viergever, M. A.},
  programmes = {cp-realworld},
}

Wink, O., Frangi, A. F., Verdonck, B., Viergever, M. A., and Niessen, W. J. (2002). 3D MRA coronary axis determination using a minimum cost path approach. Magn Reson Med, 47(6):1169–1175. DOI: 10.1002/mrm.10164.

journals Bib

@article{Wink2002,
  doi = {10.1002/mrm.10164},
  pages = {1169--1175},
  number = {6},
  volume = {47},
  year = {2002},
  journal = {Magn Reson Med},
  title = {{{3D}} MRA coronary axis determination using a minimum cost path approach},
  author = {Wink, O. and Frangi, A. F. and Verdonck, B. and Viergever, M. A. and Niessen, W. J.},
  programmes = {cp-realworld},
}

2001

Frangi, A. F., Niessen, W. J., and Viergever, M. A. (2001). Three-dimensional modeling for functional analysis of cardiac images: a review. IEEE Trans Med Imaging, 20(1):2–25. DOI: 10.1109/42.906421.

journals Bib

@article{Frangi2001,
  doi = {10.1109/42.906421},
  pages = {2--25},
  number = {1},
  volume = {20},
  year = {2001},
  journal = {{IEEE} Trans Med Imaging},
  title = {Three-dimensional modeling for functional analysis of cardiac images: a review},
  author = {Frangi, A. F. and Niessen, W. J. and Viergever, M. A.},
  programmes = {cp-realworld},
}

Frangi, A. F., Niessen, W. J., Nederkoorn, P. J., Bakker, J., Mali, W., and 1 more author. (2001). Quantitative analysis of vascular morphology from 3D MR angiograms: in vitro and in vivo results. Magn Reson Med, 45(2):311–322. DOI: 10.1002/1522-2594(200102)45:2<311::aid-mrm1040>3.0.co;2-7.

journals Bib

@article{Frangi2001a,
  doi = {10.1002/1522-2594(200102)45:2<311::aid-mrm1040>3.0.co;2-7},
  pages = {311--322},
  number = {2},
  volume = {45},
  year = {2001},
  journal = {Magn Reson Med},
  title = {Quantitative analysis of vascular morphology from {{3D}} {MR} angiograms: in vitro and in vivo results},
  author = {Frangi, A. F. and Niessen, W. J. and Nederkoorn, P. J. and Bakker, J. and {Mali}, W. and Viergever, M. A.},
  programmes = {cp-realworld},
}

Frangi, A. F., Egmont-Petersen, M., Niessen, W. J., Reiber, J. H. C., and Viergever, M. A. (2001). Bone tumor segmentation from MR perfusion images with neural networks using multi-scale pharmacokinetic features. Image Vision Comput, 19(9-10):679–690. DOI: 10.1016/s0262-8856(01)00044-0.

journals Bib

@article{Frangi2001b,
  doi = {10.1016/s0262-8856(01)00044-0},
  pages = {679--690},
  number = {9-10},
  volume = {19},
  year = {2001},
  journal = {Image Vision Comput},
  title = {Bone tumor segmentation from {MR} perfusion images with neural networks using multi-scale pharmacokinetic features},
  author = {Frangi, A. F. and Egmont-Petersen, M. and Niessen, W. J. and Reiber, J. H. C. and Viergever, M. A.},
  programmes = {cp-realworld},
}

Frangi, A. F. (2001). Three-dimensional Model-based Analysis of Vascular and Cardiac Images. Wageningen, The Netherlands: Ponsen & Looijen.

ISBN: 90-393-2647-9.

books Bib

@book{Book_Frangi2001,
  isbn = {90-393-2647-9},
  publisher = {Ponsen \& Looijen},
  location = {Wageningen, The Netherlands},
  year = {2001},
  title = {Three-dimensional Model-based Analysis of Vascular and Cardiac Images},
  author = {Frangi, A. F.},
  programmes = {cp-realworld},
}

1999

Frangi, A. F., Niessen, W. J., Hoogeveen, R. M., Walsum, T., and Viergever, M. A. (1999). Model-based quantitation of 3-D magnetic resonance angiographic images. IEEE Trans Med Imaging, 18(10):946–956. DOI: 10.1109/42.811279.

journals Bib

@article{Frangi1999a,
  doi = {10.1109/42.811279},
  pages = {946--956},
  number = {10},
  volume = {18},
  year = {1999},
  journal = {{IEEE} Trans Med Imaging},
  title = {Model-based quantitation of {3-D} magnetic resonance angiographic images},
  author = {Frangi, A. F. and Niessen, W. J. and Hoogeveen, R. M. and van Walsum, T. and Viergever, M. A.},
  programmes = {cp-realworld},
}

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eHealth Innovation— Scaling up eHealth-facilitated personalised health services: A European roadmap for sustained eHealth Innovation (CIP-ICT-PSP-2009-4)

VERTEX— VERtebral Extensive diagnosis based on X-ray images (RD10-1-0034)

CardioSuite— Evaluación de la función cardíaca y aplicación a la planificación de terapias cardiovasculares (2010-VALOR-00130)

EndoTreat— Herramienta para el planeamiento de tratamiento endovascular de aneurismas intracraneales con coils (2010-VALOR-00064)